GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002358-TA|BGIBMGA002358-PA|undefined
         (54 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   0.68 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   2.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    18   8.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    18   8.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    18   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 0.68
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 17  RVRDVIRQRWTVA--KRLAGAKSRMLVEKQDPAYFIQRSK 54
           R R+V+ QR   A  KR  GA    ++     AYF+ R++
Sbjct: 735 RGREVVAQRERAADMKRRNGALIYNILPPHVAAYFLSRAR 774


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 27 TVAKRLAGAKSRMLVEKQDPAY 48
          T+A  +AGA S  LV+ + P +
Sbjct: 19 TIASVVAGAASLTLVKAETPEH 40


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 1   MIDDREHCAKCQYQFNRVRDVIR 23
           ++ DRE+C +     NR R V +
Sbjct: 467 LLQDREYCPRYIKWTNRERGVFK 489


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 26  WTVAKRLAGAKSRMLVEKQD 45
           WTV ++    + + L+E  D
Sbjct: 141 WTVERKEGKVEGKCLIEALD 160


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 26  WTVAKRLAGAKSRMLVEKQD 45
           WTV ++    + + L+E  D
Sbjct: 157 WTVERKEGKVEGKCLIEALD 176


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 26  WTVAKRLAGAKSRMLVEKQD 45
           WTV ++    + + L+E  D
Sbjct: 214 WTVERKEGKVEGKCLIEALD 233


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754
Number of Sequences: 429
Number of extensions: 509
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 54
length of database: 140,377
effective HSP length: 34
effective length of query: 20
effective length of database: 125,791
effective search space:  2515820
effective search space used:  2515820
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.5 bits)
S2: 35 (18.2 bits)