GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002357-TA|BGIBMGA002357-PA|undefined
         (90 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   0.88 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   6.2  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    19   8.2  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 0.88
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 50  NFIRNKSRIRIRDNTFGRLSGKIKSWDFEKEVEEENYPF 88
           +F+R+  ++ ++DNT   +       D  +++ E  + F
Sbjct: 63  HFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLTEVYFSF 101


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 3   KARASGVTPRSFIRPPYTTVPRLQVGLLAGR 33
           + R++G  P +   P   T P +QV    GR
Sbjct: 83  EGRSAGSIPGASSTPENKTFPSIQVMGYQGR 113


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 19.0 bits (37), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 2   RKARASGVTPRSFIRPPYTTVPRLQVGLLAGRP 34
           R+A + G+ PR+ I+    T+  + V +L   P
Sbjct: 269 RRASSRGIIPRAKIKTVKMTLVIVFVFVLCWSP 301


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,937
Number of Sequences: 317
Number of extensions: 747
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 90
length of database: 114,650
effective HSP length: 47
effective length of query: 43
effective length of database: 99,751
effective search space:  4289293
effective search space used:  4289293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)