Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002357-TA|BGIBMGA002357-PA|undefined
(90 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671... 27 2.4
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 27 2.4
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723 26 3.2
08_01_0578 + 5139324-5140190 26 4.3
11_01_0491 + 3789264-3789596,3789999-3790071,3790260-3790327,379... 25 5.6
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 25 5.6
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 25 5.6
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 25 7.4
04_01_0557 + 7168446-7168998,7169107-7169141 25 7.4
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930 25 9.8
06_03_1504 + 30633063-30633070,30633260-30633391,30633766-306339... 25 9.8
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 25 9.8
01_01_0354 + 2804640-2804703,2804911-2806451 25 9.8
>03_05_0893 +
28566436-28566501,28566624-28566903,28567002-28567188,
28567353-28567423,28567523-28567600,28567687-28567774,
28567875-28567930,28568054-28568121
Length = 297
Score = 26.6 bits (56), Expect = 2.4
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 2 RKARASGVTPRSFIRPPYTTVPRLQVGLL----AGRPQRQNRHATVAGRWNGNFIRNKSR 57
R+A G TPR +PP P + G L A P + R NG +K+
Sbjct: 53 RRAGIGGTTPRRNPKPPRVLTPLRRSGRLVAIAAAAPAGSASGPRRSARLNGQTTEHKA- 111
Query: 58 IRIRDNTFGRLSGKIKSWDFEKEVEEENYPFKK 90
+ ++ G LS K + + E+E EEE KK
Sbjct: 112 LPLK----GSLS-KFAAEEAEEEEEEEEQEEKK 139
>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 35 QRQNRHATVAGRWNGNFIRNKSRIRIRDNTFGRLSGKIKSWD 76
QR+ R + W+G +++ R R +T+G +I SWD
Sbjct: 971 QRRGRRTS---SWSGTTTASRAYRRSRTSTYGTGFARISSWD 1009
>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
Length = 757
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 52 IRNKSRIRIRDNTFGRLSGKIKSW 75
+RN SR+ + + R+SG+I SW
Sbjct: 481 LRNLSRLEFLNLGYNRISGEIPSW 504
>08_01_0578 + 5139324-5140190
Length = 288
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 33 RPQRQNRHATVAGRWNGNFIRNKSRIRIRDNTFGRLSGKIKSWDFEKEVEEENY 86
R N + V+G WN R++ + F R + +SWD E+Y
Sbjct: 219 RAPYDNNYCIVSGMWNATLDRHRVFEAMEMVVFLRTGVRPRSWDEPDAAWTEDY 272
>11_01_0491 +
3789264-3789596,3789999-3790071,3790260-3790327,
3790754-3790842,3791544-3791715,3791839-3791907,
3792129-3792296,3792666-3792833,3792916-3793011
Length = 411
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 28 GLLAGRPQRQNRHATVAGRW 47
G L G RQ R A VAGRW
Sbjct: 18 GGLKGARGRQGRGAAVAGRW 37
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 45 GRWNGNFIRNKSRIRIRDNTFGRLSGKIKS 74
G WN + RN+SR R R + GR G+ +S
Sbjct: 178 GGWNRSR-RNRSRSRSRSRSIGRGRGRSRS 206
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 68 LSGKIKSWDFEKEVEEENYP 87
L+G ++ W E EV+EEN P
Sbjct: 646 LNGWLRKWLTEPEVQEENTP 665
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 50 NFIRNKSRIRIRDNTFGRLSGKIKSWDFEKE 80
+F+R + ++ D + LSG++ +W F KE
Sbjct: 444 HFLRTQHHLQELDLSNNNLSGRMPNWLFTKE 474
>04_01_0557 + 7168446-7168998,7169107-7169141
Length = 195
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 18 PYTTVPRLQVGLLAGRPQRQNRHATVAGRWNGNFIR 53
P T P Q L G P+R+ H V R +GN +R
Sbjct: 99 PQVTPPPGQRVRLHGLPRREEGHMIVWTRQSGNALR 134
>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
Length = 458
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 58 IRIRDNTFGRLSGKIKSWDFEKEVEEENYP 87
I + D GRLS + KSWD EE +P
Sbjct: 350 IELLDRVAGRLSREPKSWDQAVFNEELFFP 379
>06_03_1504 +
30633063-30633070,30633260-30633391,30633766-30633901,
30633992-30634106,30634230-30634288
Length = 149
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 62 DNTFGRLSGKIKSWDFEKEVEE 83
+N FG ++ K +WD +++V++
Sbjct: 92 ENPFGNIAPKNPNWDLKRDVQK 113
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 48 NGNFIRNKSRIRIRDNTFGRLSGKIKSWDFEKEVEEE 84
+G + ++ R R RD R K K W+ +KE E E
Sbjct: 169 SGQYRDDRDRERERDREKERDREKEKEWERQKERERE 205
>01_01_0354 + 2804640-2804703,2804911-2806451
Length = 534
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 55 KSRIRIRDNTFGRLSGKIKSWDFEKEVE 82
KS R+ +T+ + SWD+EK V+
Sbjct: 417 KSGCRLDSDTYNLILNLYVSWDYEKGVQ 444
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,505
Number of Sequences: 37544
Number of extensions: 108188
Number of successful extensions: 244
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 13
length of query: 90
length of database: 14,793,348
effective HSP length: 69
effective length of query: 21
effective length of database: 12,202,812
effective search space: 256259052
effective search space used: 256259052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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