GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002357-TA|BGIBMGA002357-PA|undefined
         (90 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127235-1|BAC86896.1|  328|Homo sapiens protein ( Homo sapiens ...    28   5.2  
AK125998-1|BAC86385.1|  181|Homo sapiens protein ( Homo sapiens ...    27   6.9  
AB058686-1|BAB47412.1| 1560|Homo sapiens KIAA1783 protein protein.     27   9.2  

>AK127235-1|BAC86896.1|  328|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45302 fis, clone BRHIP3003845. ).
          Length = 328

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)

Query: 4   ARASGVTPRSFIRPPYTTVPRLQVGLLAGRPQRQNRHATVAGRW 47
           AR SG TP S IR   + VPR    +      R+  HA++ G W
Sbjct: 57  ARLSGATPLSPIRLLSSFVPRGPRVIPLTNQARRTLHASLGGCW 100


>AK125998-1|BAC86385.1|  181|Homo sapiens protein ( Homo sapiens
          cDNA FLJ44010 fis, clone TESTI4024344. ).
          Length = 181

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 28 GLLAGRPQRQNRHATVAGRWNG-NFIRNKSRIR 59
          GL AGR  R   H T A R +G NF   KSR R
Sbjct: 36 GLGAGRRARAETHVTAARRRDGWNFSNPKSRDR 68


>AB058686-1|BAB47412.1| 1560|Homo sapiens KIAA1783 protein protein.
          Length = 1560

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/66 (27%), Positives = 25/66 (37%)

Query: 3   KARASGVTPRSFIRPPYTTVPRLQVGLLAGRPQRQNRHATVAGRWNGNFIRNKSRIRIRD 62
           +AR  G   R         + +L   LL  +P  Q R     GRW G     ++  R+  
Sbjct: 393 QARMRGFQARKRYLRRRAALGQLNTILLVAQPLLQRRQRLQLGRWQGWHSSERALERVPS 452

Query: 63  NTFGRL 68
              GRL
Sbjct: 453 MELGRL 458


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,090,331
Number of Sequences: 224733
Number of extensions: 487219
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 3
length of query: 90
length of database: 73,234,838
effective HSP length: 68
effective length of query: 22
effective length of database: 57,952,994
effective search space: 1274965868
effective search space used: 1274965868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)