GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002357-TA|BGIBMGA002357-PA|undefined
         (90 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   1.8  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   5.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   9.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 53   RNKSRIRIRDNTFGRLSGKIKSWDFEKEVEE 83
            R + R  I D+  GRL  ++ +W +   V +
Sbjct: 1655 RTQQRNVISDSESGRLDTEMSTWGYHHNVNK 1685


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 10  TPRSFIRPPYTTVPRL 25
           TP SFI  P  T+P L
Sbjct: 663 TPDSFIEAPNKTLPSL 678


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 32  GRPQRQNRHATVAGRWNGNFIRNKSRIR 59
           G+P RQ+        +   FI+ +S ++
Sbjct: 83  GQPSRQHAGFEFGKEYKNGFIKGQSEVQ 110


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 55  KSRIRIRDNTFGRLSGKIKSWDFEKEVEEENYPFKK 90
           + ++R   NTF   + K   +D  KE+E  +  FK+
Sbjct: 327 QKKLREEINTFCPKNNKELKYDDIKEMEYLDKVFKE 362


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,112
Number of Sequences: 429
Number of extensions: 1097
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space:  5030970
effective search space used:  5030970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)