GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002356-TA|BGIBMGA002356-PA|undefined
         (204 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    25   0.32 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.9  

>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 39  RSVFTRVVKKKCTCMSQ--KRFFNRGVSKKKYNNNILKE 75
           R V   +VK+K     Q  K+F  +G+ KK+Y N + KE
Sbjct: 82  RKVIHYLVKQKPEWWEQLQKKFDPQGIYKKRYQNYLDKE 120


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 143 WRNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDV 176
           W   +  +K+K +++   Q    C +  +  CD+
Sbjct: 212 WAKKLIVVKDKKKSRSDEQTIDICMRCHDQLCDM 245


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 14  KLEIEPGKPNKERHPENPFIPMY 36
           +LE+   K N    P  P++P Y
Sbjct: 234 QLEVNERKENLTCQPAVPYVPFY 256


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 86  NNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLK 121
           N   +K CS PT +++   S T ++    QN  + +
Sbjct: 40  NQQYTKDCSSPTPSDKLNTSTTSSVNVNDQNIRRYR 75


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,667
Number of Sequences: 317
Number of extensions: 2323
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 114,650
effective HSP length: 54
effective length of query: 150
effective length of database: 97,532
effective search space: 14629800
effective search space used: 14629800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)