GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002356-TA|BGIBMGA002356-PA|undefined
         (204 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-6|CAB04054.2|  239|Caenorhabditis elegans Hypothetical pr...    41   5e-04
AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical ...    31   0.58 
U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z46343-5|CAE17971.1|  183|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z74033-9|CAA98478.1|  805|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical...    28   5.4  
U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z73906-10|CAB54209.1|  530|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z73906-9|CAA98121.1|  571|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    27   9.4  

>Z81494-6|CAB04054.2|  239|Caenorhabditis elegans Hypothetical
           protein F02E9.5 protein.
          Length = 239

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 144 RNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDVT--IDELASYFETLVHIPKKMSSMAEM 201
           + D+  L+     K++     C  QA  PP      +DEL+ YF   V +  KMSS+AE 
Sbjct: 177 KGDVESLRMCIFDKENILPKPCSVQAARPPSPEAEEVDELSEYFTHFVRVELKMSSLAES 236

Query: 202 MYI 204
           MY+
Sbjct: 237 MYV 239


>AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical
           protein ZK355.6 protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 85  DNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLKISSESNE 128
           + + +SK+C+   ENNE LN+ ++     +Q    LK+S    +
Sbjct: 135 ETDRLSKECAFRVENNEKLNASSVCQSWFLQGMYSLKVSGNRRD 178


>U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical
           protein C52B11.3 protein.
          Length = 517

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 43  TRVVKKKCTCMSQKRFFNRGVSKKKYNNNILKEPVLKILQCCDNNDISKKCSLPTE-NNE 101
           TR++ K+ +C S     +RG   +  NNN +++P+L+  + C ++ IS+         N 
Sbjct: 296 TRLLLKQVSCKSLN---DRG---EHNNNNTVRQPLLRGTEGCHSDSISRSSQRNFRGRNV 349

Query: 102 TLNSDTLNLCTLVQNCNQLKISSES 126
           T+ S+  +    V   +++ +SS S
Sbjct: 350 TIGSNCSSTLLQVDQPDRMSLSSNS 374


>Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical
           protein K01H12.4 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 130 PTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQALNPP 173
           P +   SD   K W   + K K+KN  K S +   C   A  PP
Sbjct: 232 PMEFVSSDGRVKLWLQPLEKQKKKNSEK-SKKRERCIDDAPIPP 274


>Z46343-5|CAE17971.1|  183|Caenorhabditis elegans Hypothetical
          protein T23F11.6 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 64 SKKKYNNNILKEPVLKILQCCDNNDISKKC 93
          SK KY N    E  LK+ QCC +N + ++C
Sbjct: 69 SKTKYVNEEESEYSLKMEQCCVDNLLPERC 98


>Z74033-9|CAA98478.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 89  ISKKCSLPTE-NNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKST 134
           +S K S P + NN TLNS T    +L+   + LK   E+  PP K +
Sbjct: 395 MSSKSSTPDDFNNTTLNS-TYPEDSLLNTSDLLKQRKENRSPPAKKS 440


>AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 89  ISKKCSLPTE-NNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKST 134
           +S K S P + NN TLNS T    +L+   + LK   E+  PP K +
Sbjct: 395 MSSKSSTPDDFNNTTLNS-TYPEDSLLNTSDLLKQRKENRSPPAKKS 440


>AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.4 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 119 QLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDVTI 178
           Q+K   ++ E PT       + K   ND+  L+E ++     +N S    A+N   D  I
Sbjct: 3   QIKYRRKNREKPTNLARERENIK---NDVTHLRETSRVLMLCRNVSAQFCAINETVDGII 59

Query: 179 DEL 181
           D+L
Sbjct: 60  DKL 62


>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 64  SKKKYNNNILKEPVLKILQCCDNNDISKKCSLPTENNETLNSD 106
           S K   NN +  P  K+  C D  DI+K  S+   N   +++D
Sbjct: 581 SPKTTMNNSIPIPYEKLKSCVDQGDITKVSSVLCSNGWPVDTD 623


>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 165 CCQQALNPPCDVTIDELASYFETLVHI 191
           C   A+N  CD++ D+L + F+ + H+
Sbjct: 64  CADIAINSRCDLSEDQLVATFQNMKHL 90


>Z73906-10|CAB54209.1|  530|Caenorhabditis elegans Hypothetical
           protein D2030.9b protein.
          Length = 530

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 57  RFFNRGVSKKKYNNNILKEPVLKILQC 83
           RF+ R   K KY +  +K   L++ QC
Sbjct: 148 RFYQRNPDKSKYRSKYMKSDELRVDQC 174


>Z73906-9|CAA98121.1|  571|Caenorhabditis elegans Hypothetical
           protein D2030.9a protein.
          Length = 571

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 57  RFFNRGVSKKKYNNNILKEPVLKILQC 83
           RF+ R   K KY +  +K   L++ QC
Sbjct: 189 RFYQRNPDKSKYRSKYMKSDELRVDQC 215


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 68  YNNNILKEPVLKILQCCDNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLK 121
           ++ N+++E    +  CC N D  ++ +   E   T+ S T  +  + Q C + K
Sbjct: 702 HDANLIQEKCTHLRDCCPNFDECREETFEVEVERTIISLTATINEIKQECVKRK 755


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,557,798
Number of Sequences: 27539
Number of extensions: 243313
Number of successful extensions: 702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 13
length of query: 204
length of database: 12,573,161
effective HSP length: 78
effective length of query: 126
effective length of database: 10,425,119
effective search space: 1313564994
effective search space used: 1313564994
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)