GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002356-TA|BGIBMGA002356-PA|undefined
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 85  DNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLKISSESNE 128
           ++N I    SL + + E L  D LNL T + + +    SSE N+
Sbjct: 343 NSNQIVSDNSL-SSSEEKLKQDILNLRTDISSSSSSISSSEEND 385


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 46  VKKKCTCMSQKRFFNRGVSKKKYNNNILKEPVLKILQCCDNNDISKKC 93
           V +K   M +K    R    KK      KE  ++++  C N D S KC
Sbjct: 75  VLEKFNVMDKKNGKIRYNLLKKVIPEAFKEIGVEMIDSCSNVDSSDKC 122


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 18/66 (27%), Positives = 23/66 (34%)

Query: 60  NRGVSKKKYNNNILKEPVLKILQCCDNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQ 119
           N  +  KK+NN I     L  L    N   S   S+    N   N D      +    N 
Sbjct: 376 NNDLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNND 435

Query: 120 LKISSE 125
           L I+ E
Sbjct: 436 LSINEE 441


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 95  LPTENNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLK 151
           L  EN+      TL    + +  + + +    N  PT S H D   +     +A  K
Sbjct: 442 LERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFK 498


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,585
Number of Sequences: 429
Number of extensions: 2932
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)