Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002355-TA|BGIBMGA002355-PA|IPR000672|Tetrahydrofolate
dehydrogenase/cyclohydrolase
(301 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41552-3|AAC69100.2| 303|Caenorhabditis elegans Dauer or aging ... 189 2e-48
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 34 0.11
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 34 0.11
AF106575-5|AAC78171.1| 421|Caenorhabditis elegans Hypothetical ... 29 4.1
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 29 5.4
U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical pr... 29 5.4
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 29 5.4
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 29 5.4
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 29 5.4
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 29 5.4
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 28 7.1
U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 28 9.4
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 28 9.4
AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical ... 28 9.4
>U41552-3|AAC69100.2| 303|Caenorhabditis elegans Dauer or aging
adult overexpressionprotein 3 protein.
Length = 303
Score = 189 bits (461), Expect = 2e-48
Identities = 119/302 (39%), Positives = 167/302 (55%), Gaps = 20/302 (6%)
Query: 1 MARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCII-VGDDPASHTYVRNKVEAAKF 59
+A I+ G + ++ ++ QKIA+ + I+ VG+ S+ Y+ +K++ AK
Sbjct: 2 VAEIVSGLEYSKKVLHDVGQKIAKTREHHPNFHAVLAIVQVGNRSDSNVYINSKLKKAKE 61
Query: 60 VGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVP--DTINERRVCDAIAPEK 117
+G D I IT+ L EI LN DN +DGI++QLP+ I+ V D I P K
Sbjct: 62 IGADGKLIKLPDTITQGDLKREIMALNHDNEIDGIIIQLPLDCKHEIDADSVIDLIDPLK 121
Query: 118 DIDGFHIINIGRLCV-DLP-TIVPATALAVVEMLKRFNIDT---FGRNAVVIGRSKNVGM 172
D+DG IN GRL +L TI P T + ++++ D G+ VV+GRSK VG
Sbjct: 122 DVDGLTRINAGRLARGELQRTIFPCTPFGCLYLVQQATGDANFVSGKEVVVLGRSKIVGS 181
Query: 173 PIAMMLHSDKRHESGLGMDATVTICHRYTPKDKLEAYCRNADIIITATGLPKLIKADMVK 232
P A + L TVTICH TP L+ C ADI+I A G +KAD +K
Sbjct: 182 PAAALF---------LWHHGTVTICHSKTPN--LKEKCLRADILIVAIGRKHFVKADWIK 230
Query: 233 PGATIIDVGITRITDENGKSRLVGDVDYEEVSKIAGAITPVPGGVGPMTVAMLMHNTFQA 292
PGA +ID GI + D+ ++ GDVD E ++AG +TPVPGGVGPMTVAML+ NTF+
Sbjct: 231 PGAFVIDCGIN-VGDDPNSRKIYGDVDTEAAKEVAGFLTPVPGGVGPMTVAMLIRNTFEQ 289
Query: 293 AQ 294
A+
Sbjct: 290 AK 291
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 3 RILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 54
R LD +A +KEL ++ + VSL +RA I C + G P H +K+
Sbjct: 1734 RNLDDVDIAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 3 RILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 54
R LD +A +KEL ++ + VSL +RA I C + G P H +K+
Sbjct: 1734 RNLDDVDIAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 3 RILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 54
R LD +A +KEL ++ + VSL +RA I C + G P H +K+
Sbjct: 1734 RNLDDVDIAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785
>AF106575-5|AAC78171.1| 421|Caenorhabditis elegans Hypothetical
protein K04F1.12 protein.
Length = 421
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 30 NRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNL 85
+R PT CI G S + + + DAL I ++D+TE+QL S +NL
Sbjct: 71 SRCPT-GCIFDGSILYSDSIKNFPKKCSTVCAPDALYIGYETDLTEKQLTSTFKNL 125
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 28.7 bits (61), Expect = 5.4
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 152 FNIDTF-GRNAVVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYTPKDKLEAYC 210
F ID F GR + V+ I ++ + K+ S ++ +V + P +
Sbjct: 269 FKIDQFSGRVSTVLPVGYGT-YHIHVVARNQKKQRSDAWLEISVKKEQKLEPMTSSRSRR 327
Query: 211 RNADIIITA---TGLPKLIKADMVKP---GATIIDVGITRI---TDENGKSRLVGDVDYE 261
DI+ T + + K DM P G TI ++ + + D++GK L+ ++YE
Sbjct: 328 HLDDIVFRIPENTTMEDIEKKDMKIPLFAGETIGEINVAKEWLKIDDDGKIHLLKPLNYE 387
Query: 262 EVSKIAGAITPVPGGVGPMTVAMLMH 287
+ S I A P+ G T + +H
Sbjct: 388 KTSSII-ATVPINGLQSTRTQTIRIH 412
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 28.7 bits (61), Expect = 5.4
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 152 FNIDTF-GRNAVVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYTPKDKLEAYC 210
F ID F GR + V+ I ++ + K+ S ++ +V + P +
Sbjct: 269 FKIDQFSGRVSTVLPVGYGT-YHIHVVARNQKKQRSDAWLEISVKKEQKLEPMTSSRSRR 327
Query: 211 RNADIIITA---TGLPKLIKADMVKP---GATIIDVGITRI---TDENGKSRLVGDVDYE 261
DI+ T + + K DM P G TI ++ + + D++GK L+ ++YE
Sbjct: 328 HLDDIVFRIPENTTMEDIEKKDMKIPLFAGETIGEINVAKEWLKIDDDGKIHLLKPLNYE 387
Query: 262 EVSKIAGAITPVPGGVGPMTVAMLMH 287
+ S I A P+ G T + +H
Sbjct: 388 KTSSII-ATVPINGLQSTRTQTIRIH 412
>U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical
protein T16A1.8 protein.
Length = 368
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 44 PASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQL 98
P SHT VRN+VE K V + +++D T+ + + + + +V + + +
Sbjct: 301 PGSHTPVRNEVEIGK-VEVRTYIVSKDGIQTDPEKIKAVSKFPQPKNVMDVCLSI 354
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 29 GNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 61
GN + T R I + +DPA+ Y +VE K +G
Sbjct: 529 GNYSSTSRSISINEDPAASHYYGQRVERKKRLG 561
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 29 GNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 61
GN + T R I + +DPA+ Y +VE K +G
Sbjct: 529 GNYSSTSRSISINEDPAASHYYGQRVERKKRLG 561
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 28.7 bits (61), Expect = 5.4
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 152 FNIDTF-GRNAVVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYTPKDKLEAYC 210
F ID F GR + V+ I ++ + K+ S ++ +V + P +
Sbjct: 269 FKIDQFSGRVSTVLPVGYGT-YHIHVVARNQKKQRSDAWLEISVKKEQKLEPMTSSRSRR 327
Query: 211 RNADIIITA---TGLPKLIKADMVKP---GATIIDVGITRI---TDENGKSRLVGDVDYE 261
DI+ T + + K DM P G TI ++ + + D++GK L+ ++YE
Sbjct: 328 HLDDIVFRIPENTTMEDIEKKDMKIPLFAGETIGEINVAKEWLKIDDDGKIHLLKPLNYE 387
Query: 262 EVSKIAGAITPVPGGVGPMTVAMLMH 287
+ S I A P+ G T + +H
Sbjct: 388 KTSSII-ATVPINGLQSTRTQTIRIH 412
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 28.7 bits (61), Expect = 5.4
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 152 FNIDTF-GRNAVVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYTPKDKLEAYC 210
F ID F GR + V+ I ++ + K+ S ++ +V + P +
Sbjct: 269 FKIDQFSGRVSTVLPVGYGT-YHIHVVARNQKKQRSDAWLEISVKKEQKLEPMTSSRSRR 327
Query: 211 RNADIIITA---TGLPKLIKADMVKP---GATIIDVGITRI---TDENGKSRLVGDVDYE 261
DI+ T + + K DM P G TI ++ + + D++GK L+ ++YE
Sbjct: 328 HLDDIVFRIPENTTMEDIEKKDMKIPLFAGETIGEINVAKEWLKIDDDGKIHLLKPLNYE 387
Query: 262 EVSKIAGAITPVPGGVGPMTVAMLMH 287
+ S I A P+ G T + +H
Sbjct: 388 KTSSII-ATVPINGLQSTRTQTIRIH 412
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 77 QLLSEIQNLNEDNSVDGILVQLPVPDTINERR 108
+++S NLN+D+S+ I VQ VP T +ERR
Sbjct: 3543 RIISHHLNLNDDSSIQLISVQ-AVPSTESERR 3573
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 77 QLLSEIQNLNEDNSVDGILVQLPVPDTINERR 108
+++S NLN+D+S+ I VQ VP T +ERR
Sbjct: 3543 RIISHHLNLNDDSSIQLISVQ-AVPSTESERR 3573
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 77 QLLSEIQNLNEDNSVDGILVQLPVPDTINERR 108
+++S NLN+D+S+ I VQ VP T +ERR
Sbjct: 3543 RIISHHLNLNDDSSIQLISVQ-AVPSTESERR 3573
>U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform a protein.
Length = 497
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 67 INRDSDITEEQLLSEIQNLNEDNSVDGI-LVQLPVPDTINE 106
IN ++D+TEE+L +I+N N + G L +L VP T +
Sbjct: 154 INANTDLTEEKLRDKIKNENIEMMTIGFDLNELGVPMTTQD 194
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 67 INRDSDITEEQLLSEIQNLNEDNSVDGI-LVQLPVPDTINE 106
IN ++D+TEE+L +I+N N + G L +L VP T +
Sbjct: 390 INANTDLTEEKLRDKIKNENIEMMTIGFDLNELGVPMTTQD 430
>AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical
protein C39B5.7 protein.
Length = 291
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 92 DGILVQLPVPDTINERRVCDAIAPEKDIDGFHIINIG-RLCVD 133
D IL +LP D ++ R+VC ++ D G H+ I +C D
Sbjct: 7 DEILSKLPAMDLLSCRKVCKSLRSAVDQSGNHLNRISFDICND 49
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,211,070
Number of Sequences: 27539
Number of extensions: 306477
Number of successful extensions: 769
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 27
length of query: 301
length of database: 12,573,161
effective HSP length: 81
effective length of query: 220
effective length of database: 10,342,502
effective search space: 2275350440
effective search space used: 2275350440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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