GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002354-TA|BGIBMGA002354-PA|IPR000209|Peptidase S8 and
S53, subtilisin, kexin, sedolisin, IPR002884|Proprotein convertase, P,
IPR006211|Furin-like cysteine rich region, IPR006212|Furin-like
repeat, IPR006058|2Fe-2S ferredoxin, iron-sulfur binding site,
IPR008979|Galactose-binding like, IPR009030|Growth factor, receptor
         (998 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   1.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       25   3.4  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   5.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   5.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   5.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   5.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   5.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   5.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 784 TGPRRDQCASCPPDWRLAAGECRPECPQN 812
           +G R  + A+C PD       C  ECP+N
Sbjct: 709 SGNRLARPANCSPDLYAVMLNCWKECPKN 737


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 35/129 (27%), Positives = 48/129 (37%), Gaps = 27/129 (20%)

Query: 678 CHESCDSC-YGPSQN--SCVSCKIGDFVFKNQCISKCP-SGFYADSQKRECLECPI---- 729
           CHE+ + C   P +N  +CV  KI  F    QCI K    G   +    +C   P     
Sbjct: 65  CHENINDCKVNPCENGGTCVD-KINAF----QCICKEGWEGALCNINTDDCSPNPCRNNG 119

Query: 730 GCLVCSYGVCSSCKEEWTLTKGGSCFPDGNEKCDTSYYPDDGICSKCYLSCETCTGPRRD 789
            C+        +CK  W   KG +C    +  CD +   + G          TC    + 
Sbjct: 120 SCVDRIADFECNCKNGW---KGKTCSLKDSH-CDHTTCKNGG----------TCQDLGKT 165

Query: 790 QCASCPPDW 798
               CPPDW
Sbjct: 166 FMCRCPPDW 174


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 319 VAPQHICKSQEINEDKSIETSFGYTISVHMDVN 351
           + P ++ +    NE + +E  FG T+   +DV+
Sbjct: 12  LGPYNVLERPVANESEPLEVKFGLTLQQIIDVD 44


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 319 VAPQHICKSQEINEDKSIETSFGYTISVHMDVN 351
           + P ++ +    NE + +E  FG T+   +DV+
Sbjct: 12  LGPYNVLERPVANESEPLEVKFGLTLQQIIDVD 44


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 319 VAPQHICKSQEINEDKSIETSFGYTISVHMDVN 351
           + P ++ +    NE + +E  FG T+   +DV+
Sbjct: 12  LGPYNVLERPVANESEPLEVKFGLTLQQIIDVD 44


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 319 VAPQHICKSQEINEDKSIETSFGYTISVHMDVN 351
           + P ++ +    NE + +E  FG T+   +DV+
Sbjct: 12  LGPYNVLERPVANESEPLEVKFGLTLQQIIDVD 44


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 319 VAPQHICKSQEINEDKSIETSFGYTISVHMDVN 351
           + P ++ +    NE + +E  FG T+   +DV+
Sbjct: 12  LGPYNVLERPVANESEPLEVKFGLTLQQIIDVD 44


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 32  LSQNYDPAASTDINGNDTDPTP 53
           L+ N++P+A  D++G +   TP
Sbjct: 453 LNMNWNPSAQNDLSGVNLSETP 474


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,906
Number of Sequences: 317
Number of extensions: 13307
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 998
length of database: 114,650
effective HSP length: 64
effective length of query: 934
effective length of database: 94,362
effective search space: 88134108
effective search space used: 88134108
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)