GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002353-TA|BGIBMGA002353-
PA|IPR003140|Phospholipase/Carboxylesterase
         (235 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    27   0.13 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.51 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.3  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 8   CMESLDTDIRRLSVSLFAHADGAQSHHLHRIAPYHRHGWASTIAGI-RGPHVKV 60
           CM +   DI   ++      D  QS +L    P+H HG+A  + GI R P   V
Sbjct: 566 CMCTHQVDIPLNAIVEVVLVDEVQSPNLSH--PFHLHGYAFNVVGIGRSPDQNV 617


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 8   CMESLDTDIRRLSVSLFAHADGAQSHHLHRIAPYHRHGWASTIAGI-RGPHVKV 60
           CM +   DI   ++      D  Q  +L    P+H HG+A  + GI R P   V
Sbjct: 566 CMCTHKVDIPLNAIVEIVLVDEVQQPNLSH--PFHLHGYAFNVIGIGRSPDQNV 617


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 13  DTDIRRLSVSLFAHADGAQSHHLHRIAPYHRHGWAS 48
           ++ +     SL    +GA +HHL  +  Y RH + S
Sbjct: 131 NSHVHHHQTSLLGKVEGAATHHLGSV--YSRHPYES 164


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
          protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 8  CMESLDTDIRRLSVSLF 24
          C+E LD  +R+L+  LF
Sbjct: 72 CLEDLDRSLRKLNSRLF 88


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 52  GIRGPHVKVICPTASTMPVTLNNG 75
           G + P V+VI P  +   + L NG
Sbjct: 146 GQKEPQVQVIVPEVAPNNIILGNG 169


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,895
Number of Sequences: 317
Number of extensions: 2167
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 114,650
effective HSP length: 55
effective length of query: 180
effective length of database: 97,215
effective search space: 17498700
effective search space used: 17498700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)