GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002353-TA|BGIBMGA002353-
PA|IPR003140|Phospholipase/Carboxylesterase
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...   120   2e-28
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    27   2.4  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    27   3.1  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   5.5  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score =  120 bits (288), Expect = 2e-28
 Identities = 63/180 (35%), Positives = 101/180 (56%), Gaps = 8/180 (4%)

Query: 57  HVKVICPTASTMPVTLNNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAG 116
           H+K I P A ++PVT+NNG +MP+W+D+ +      EDE GI R+   +H LI  E+  G
Sbjct: 45  HIKWIFPNAPSIPVTVNNGMKMPAWYDIYSFADMKREDENGILRSAGQLHELIDAELALG 104

Query: 117 VPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGL-KAPVDLPIFQ 175
           +P+D++L+GGFSQG         TYP+RLAG+M  S +LP    FP  L +   ++PI  
Sbjct: 105 IPSDRILIGGFSQGCMVSLYAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAKEIPILL 164

Query: 176 AHGDKDPVVSFKWGQMTASCLKTFMKNVKFS----TYQGLAHSSSIAELKDMQEFIEKTL 231
            +  +DP+V      ++++  K  + N++       ++G AHS S      M +F +  +
Sbjct: 165 TYMTEDPIVP---SVLSSASAKYLINNLQLKCLDRPFEGDAHSLSSESFMAMYKFTQTVI 221


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 72  LNNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGG 131
           + N  R P  FD++    TA E  E  ER       L    +  G+  +K++L G S GG
Sbjct: 132 MGNSSRPP--FDIK--GQTASEKVEETERF--FTESLETWRIGHGI--EKMILVGHSMGG 183

Query: 132 XXXXXXXXTYPERLAGVMSLS 152
                    YPER+  ++ +S
Sbjct: 184 YLSAVYAMQYPERVEKLLLVS 204


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 59  KVICPTASTMPVTLNNGFRMPSW--FDLRTLDATAPEDEE 96
           +VIC +  T PV L+   R  SW  FD + L     E+E+
Sbjct: 188 RVICASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEED 227


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 188 WGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKD 222
           WGQ   + L TF++   F  Y       +++ELKD
Sbjct: 91  WGQFNRAHLPTFLRTPGFKLY-AWVFGCNLSELKD 124


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,154
Number of Sequences: 5004
Number of extensions: 40935
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 4
length of query: 235
length of database: 2,362,478
effective HSP length: 71
effective length of query: 164
effective length of database: 2,007,194
effective search space: 329179816
effective search space used: 329179816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)