GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002353-TA|BGIBMGA002353-
PA|IPR003140|Phospholipase/Carboxylesterase
         (235 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-3|CAB00042.2|  223|Caenorhabditis elegans Hypothetical pr...   171   5e-43
AY691524-1|AAU01163.1|  213|Caenorhabditis elegans acyl protein ...   166   1e-41
AY691523-1|AAU01162.1|  213|Caenorhabditis elegans acyl protein ...   166   1e-41
U28742-3|AAA68333.3|  837|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    32   0.31 
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    32   0.31 
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical p...    27   8.8  
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z75712-3|CAB00042.2|  223|Caenorhabditis elegans Hypothetical
           protein K04G2.5 protein.
          Length = 223

 Score =  171 bits (415), Expect = 5e-43
 Identities = 82/185 (44%), Positives = 111/185 (60%), Gaps = 1/185 (0%)

Query: 44  HGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFRMPSWFDLRTLDATAPEDEEGIERAT 102
           HGWA       +  ++K ICP +S  PVTLN G RMP+WFDL  LD  A EDE+GI RAT
Sbjct: 33  HGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGLDPNAQEDEQGINRAT 92

Query: 103 DLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHGYFP 162
             VH LI  EV AG+PA ++ +GGFS GG        TYP++L G++ LS +  +   FP
Sbjct: 93  QYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSSFFLQRTKFP 152

Query: 163 GGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKD 222
           G   A    PIF  HG  D +V  ++GQM+   +K F   V+  TY+G+ HSS   E++D
Sbjct: 153 GSFTANNATPIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHSSCGEEMRD 212

Query: 223 MQEFI 227
           ++ F+
Sbjct: 213 VKTFL 217


>AY691524-1|AAU01163.1|  213|Caenorhabditis elegans acyl protein
           thioesterase 1 protein.
          Length = 213

 Score =  166 bits (404), Expect = 1e-41
 Identities = 81/181 (44%), Positives = 107/181 (59%), Gaps = 1/181 (0%)

Query: 44  HGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFRMPSWFDLRTLDATAPEDEEGIERAT 102
           HGWA       +  ++K ICP +S  PVTLN G RMP+WFDL  LD  A EDE+GI RAT
Sbjct: 33  HGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGLDPNAQEDEQGINRAT 92

Query: 103 DLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHGYFP 162
             VH LI  EV AG+PA ++ +GGFS GG        TYP++L G++ LS    +   FP
Sbjct: 93  QYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSSXFLQRTKFP 152

Query: 163 GGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKD 222
           G   A    PIF  HG  D +V  ++GQM+   +K F   V+  TY+G+ HSS   E++D
Sbjct: 153 GSFTANNATPIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHSSCGEEMRD 212

Query: 223 M 223
           +
Sbjct: 213 V 213


>AY691523-1|AAU01162.1|  213|Caenorhabditis elegans acyl protein
           thioesterase 1 protein.
          Length = 213

 Score =  166 bits (404), Expect = 1e-41
 Identities = 81/181 (44%), Positives = 107/181 (59%), Gaps = 1/181 (0%)

Query: 44  HGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFRMPSWFDLRTLDATAPEDEEGIERAT 102
           HGWA       +  ++K ICP +S  PVTLN G RMP+WFDL  LD  A EDE+GI RAT
Sbjct: 33  HGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGLDPNAQEDEQGINRAT 92

Query: 103 DLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHGYFP 162
             VH LI  EV AG+PA ++ +GGFS GG        TYP++L G++ LS    +   FP
Sbjct: 93  QYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSSXFLQRTKFP 152

Query: 163 GGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKD 222
           G   A    PIF  HG  D +V  ++GQM+   +K F   V+  TY+G+ HSS   E++D
Sbjct: 153 GSFTANNATPIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHSSCGEEMRD 212

Query: 223 M 223
           +
Sbjct: 213 V 213


>U28742-3|AAA68333.3|  837|Caenorhabditis elegans Hypothetical
           protein T20B5.3 protein.
          Length = 837

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 39  APYHRHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSWF-DLRTLDATAPE 93
           AP    G A+T   IR   + ++C T     +   NG R+ S F D RTLD    E
Sbjct: 442 APVVLPGLATTAEEIRNQRLSLLCATCEMYYLPFENGPRVQSMFKDFRTLDPLQSE 497


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 63  PTASTMPV--TL---NNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHG 107
           P++ T+PV  TL   N+G R  + F LR +D  + +D+ GIE  T  +HG
Sbjct: 783 PSSPTIPVENTLKRRNSGTRRNALFSLRDMDEKSAKDDHGIEHKT--IHG 830


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 63  PTASTMPV--TL---NNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHG 107
           P++ T+PV  TL   N+G R  + F LR +D  + +D+ GIE  T  +HG
Sbjct: 711 PSSPTIPVENTLKRRNSGTRRNALFSLRDMDEKSAKDDHGIEHKT--IHG 758


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 145 LAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHG 178
           LA  + +S +L     FPGGL+AP+    F   G
Sbjct: 136 LAYAIPMSIYLAIFTIFPGGLRAPIAFAFFNREG 169


>Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical
           protein F01D5.8 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 118 PADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLS 152
           P  K+++ G+S G         T P+RLAGV+ ++
Sbjct: 148 PDKKIVVMGYSIGTTAAVDLAATNPDRLAGVVLIA 182


>U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical
           protein D2092.1a protein.
          Length = 804

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 165 LKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNV 203
           LK   DLP+  A G  DP V F++         T  KN+
Sbjct: 63  LKNGEDLPVKDASGSSDPYVKFRYKDNIVYKSGTIFKNL 101


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 165 LKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNV 203
           LK   DLP+  A G  DP V F++         T  KN+
Sbjct: 149 LKNGEDLPVKDASGSSDPYVKFRYKDNIVYKSGTIFKNL 187


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,720,922
Number of Sequences: 27539
Number of extensions: 232218
Number of successful extensions: 382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 11
length of query: 235
length of database: 12,573,161
effective HSP length: 79
effective length of query: 156
effective length of database: 10,397,580
effective search space: 1622022480
effective search space used: 1622022480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)