GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002353-TA|BGIBMGA002353-
PA|IPR003140|Phospholipase/Carboxylesterase
         (235 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 36  HRIAPYHRHGWASTIAGIRG 55
           H+   Y  HG+AS +  ++G
Sbjct: 610 HKAFTYRMHGYASVVGPVKG 629


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 146 AGVMSLSCWLPRHGYFPG 163
           A V+  SC+  R+ YFPG
Sbjct: 92  ATVLPNSCYQERYEYFPG 109


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 146 AGVMSLSCWLPRHGYFPG 163
           A V+  SC+  R+ YFPG
Sbjct: 92  ATVLPNSCYQERYEYFPG 109


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2
          protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 8  CMESLDTDIRRLSVSLF 24
          C+E LD  +R+L+  LF
Sbjct: 76 CLEDLDCSLRKLNSRLF 92


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 33  HHLHRIAPYHRH 44
           HH H   P+H+H
Sbjct: 433 HHSHAATPHHQH 444


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,785
Number of Sequences: 429
Number of extensions: 2396
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 235
length of database: 140,377
effective HSP length: 56
effective length of query: 179
effective length of database: 116,353
effective search space: 20827187
effective search space used: 20827187
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)