GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002352-TA|BGIBMGA002352-PA|IPR006573|NEUZ,
IPR001841|Zinc finger, RING-type
         (592 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    27   0.48 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   3.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   7.8  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 0.48
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 40  SCTGGAPNNLPPLTFHSVHGENIRVSRD 67
           +C G  P   PP+TF+S++G +  ++ D
Sbjct: 172 ACMGPPPQPEPPVTFNSLNGAHTPLTDD 199


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 147 RFCETDNVLHYYVNSTGDVHFGVNGEDRGLFFSGVDT 183
           ++ +  NV+ Y +  + D   GV G   GL+ S VDT
Sbjct: 197 KYLDIINVMAYDLRGSWD---GVTGHHSGLYPSAVDT 230


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 130 CPDLTNKPGNWAKALGE 146
           CP++ NK   W K   E
Sbjct: 313 CPEILNKDSGWTKKWDE 329


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,498
Number of Sequences: 317
Number of extensions: 6454
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 592
length of database: 114,650
effective HSP length: 61
effective length of query: 531
effective length of database: 95,313
effective search space: 50611203
effective search space used: 50611203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)