GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002352-TA|BGIBMGA002352-PA|IPR006573|NEUZ,
IPR001841|Zinc finger, RING-type
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    32   0.19 
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.45 
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    29   1.4  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   3.2  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    28   3.2  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   7.3  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    27   9.7  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 538 ECSICYENPIDSVLYMCGHMCMCYRCAVQQWRGKGGGQCPLCR 580
           EC IC+    D V+  CGH   C  C +Q        QCP CR
Sbjct: 168 ECQICFGMLYDPVVSPCGH-TFCGPCLMQAL--TQSPQCPTCR 207


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 539 CSICYEN----PIDSVLYMCGHMCMCYRCAVQQWRGKGGGQCPLCRA 581
           C IC E      I   L  C H    ++  + QW   G   CPLCRA
Sbjct: 766 CLICLETYTNGDICRKLQACKHFF--HQACIDQWLTTGNNSCPLCRA 810


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 538 ECSICYENPIDSVLYMCGHMCMCYRCAVQQWRGKGGGQ-CPLCRAQI 583
           +C IC ++P +     CGH+  C  C +         Q CP+CR ++
Sbjct: 205 KCVICLDSPENLSCTPCGHI-FCNFCILSALGTTAATQKCPVCRRKV 250


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 554 CGHMCMCYRCAVQQWRGKGGGQCPLCRAQIK 584
           CGH   CY C + + +      CP+C+ +I+
Sbjct: 213 CGHT-YCYACIMSRLKLVNNVSCPICKHRIR 242


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 484 RNEVQCSSTQNSTNEQVQMPN-----GHPEPLRLVERLPSTSRQHQPVYSVIGEGPTGAE 538
           RN ++     N  N    MP      G  E ++ V  + S+S  H P+YS +  G  G+ 
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMKRVLGISSSSENHSPLYSYLAGGMAGSV 241

Query: 539 CSICYENPIDSVLY 552
             + +  P+D++ +
Sbjct: 242 AQM-FIYPVDTLKF 254


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 513 VERLPSTSRQH-QPVYSVIGEGPTGAECSICYEN-PIDSV---LYMCGHMCMCYRCAVQQ 567
           +E+ P  S++  +    V     T   C +C  N  ++     L  C H    +R  + Q
Sbjct: 498 IEKPPVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFF--HRECIDQ 555

Query: 568 WRGKGGGQCPLCRAQ 582
           W       CPLCR +
Sbjct: 556 WLTSSQNSCPLCRTK 570


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 130 CPDLTNKPGNWAKALGERFCETDNVLHYYVNS 161
           CPD +++PG  A   G+ FC+    +  Y+ S
Sbjct: 67  CPDGSDEPGTSACHNGKFFCKNTGYISSYIPS 98


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,044
Number of Sequences: 5004
Number of extensions: 112777
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 7
length of query: 592
length of database: 2,362,478
effective HSP length: 77
effective length of query: 515
effective length of database: 1,977,170
effective search space: 1018242550
effective search space used: 1018242550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)