GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002352-TA|BGIBMGA002352-PA|IPR006573|NEUZ,
IPR001841|Zinc finger, RING-type
         (592 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    36   0.004
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    36   0.004
CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    29   0.46 
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   7.5  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              24   9.9  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 538 ECSICYENPIDSVLYMCGHMCMCYRCAVQQWRGKGGGQCPLCRAQIKDVIRTYK 591
           +C +C E+ +D ++  C H   C RCA+ Q+  K   +C +C  Q   +    K
Sbjct: 246 KCYVCRESFVDPIVTKCKHY-FCERCALAQY--KKSSRCAICGVQTNGMFNPAK 296


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 538 ECSICYENPIDSVLYMCGHMCMCYRCAVQQWRGKGGGQCPLCRAQIKDVIRTYK 591
           +C +C E+ +D ++  C H   C RCA+ Q+  K   +C +C  Q   +    K
Sbjct: 246 KCYVCRESFVDPIVTKCKHY-FCERCALAQY--KKSSRCAICGVQTNGMFNPAK 296


>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 489 CSSTQNSTNEQVQMPNGHPEPLRLVER 515
           C++T  ST    QM N HPE   +VE+
Sbjct: 25  CTTTTESTGTDQQMANSHPEEPIVVEK 51


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 334 EYWVVRRDAANGLRRGDELAVTLTLDGEVRVSRNGSNPVTVMHVDHTLRLWAFVDVYGAT 393
           +YW   R A N      +     T  GE+ +  +G+N V  +  D   ++W   D + A 
Sbjct: 50  QYWKDERLAFNAFALWGDNQKDQT--GEIMIEDDGANDVITLSGDFAEKIWV-PDTFFAN 106

Query: 394 QKVRMLSTQT 403
            K   L   T
Sbjct: 107 DKNSFLHDVT 116


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 468 PLAQPSTCAQQFQSRPRNEVQCSSTQNSTNEQVQMPNGHPEPLRLVERLPSTSRQHQPVY 527
           P+  P T    + S    E + + T  +    + +P     PL ++++LPS S+Q + + 
Sbjct: 58  PVEPPPTAGIVYLSDDEEE-ELNCTILAGPSGLAVPPMGKVPLVVLDKLPSQSQQREEMT 116

Query: 528 SVIGEGPTGAECS 540
                 P   +CS
Sbjct: 117 VPATSTPKAGKCS 129


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,380
Number of Sequences: 2123
Number of extensions: 28539
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 5
length of query: 592
length of database: 516,269
effective HSP length: 68
effective length of query: 524
effective length of database: 371,905
effective search space: 194878220
effective search space used: 194878220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)