GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002350-TA|BGIBMGA002350-PA|IPR000719|Protein kinase,
IPR002290|Serine/threonine protein kinase, IPR008271|Serine/threonine
protein kinase, active site, IPR011009|Protein kinase-like
         (252 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    36   2e-04
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    26   0.32 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.97 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.97 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.97 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.97 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.97 
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    21   9.0  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 137 QVADAVEYCHQHHVIHRDIKPENILVAFSGDLKLADFEMIKREVYDVSV 185
           QVA  +E+  +  V+HRD+   N+LV  +  +K++DF  + R+VY  +V
Sbjct: 600 QVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFG-LSRDVYQDNV 647



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 151 IHRDIKPENILVAFSGD---LKLADFEMIKREVYDVSVDHWCIGVLLYEFL-VGKPPF 204
           + RD+  +N+     G    ++    E +  + Y    D W  GVLL+E + +G  P+
Sbjct: 638 LSRDVYQDNVYCKNGGGKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPY 695



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 8   LETKIINHDAYGSSYKWSPRD 28
           L+  I+  + Y +  KWSP +
Sbjct: 168 LQNLILKENTYDAVIKWSPNE 188


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   LETKI--INHDAYGSSYKWSPRDFELGSSLGQGKFGHVHVAREKKTGFLVAIK 58
           L+TK+  +  + +G    WS    +   S G GK+  ++  R++  G+ V ++
Sbjct: 839 LKTKMAWLKEEGFGGIMIWSVDMDDFRGSCGSGKYPLINAMRQELEGYKVKLE 891


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+   +GG+L   +TN
Sbjct: 148 SWTYDGNQLDLVLNSESGGDLSDFITN 174


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+   +GG+L   +TN
Sbjct: 148 SWTYDGNQLDLVLNSESGGDLSDFITN 174


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+   +GG+L   +TN
Sbjct: 148 SWTYDGNQLDLVLNSESGGDLSDFITN 174


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+   +GG+L   +TN
Sbjct: 148 SWTYDGNQLDLVLNSESGGDLSDFITN 174


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+   +GG+L   +TN
Sbjct: 148 SWTYDGNQLDLVLNSESGGDLSDFITN 174


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 222 VYPSHIPDGAKDLISKTYGWFH 243
           VY  +IPDG    +     W H
Sbjct: 59  VYTRNIPDGIHTSLYPVLVWIH 80


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,264
Number of Sequences: 317
Number of extensions: 2697
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 252
length of database: 114,650
effective HSP length: 55
effective length of query: 197
effective length of database: 97,215
effective search space: 19151355
effective search space used: 19151355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)