GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002350-TA|BGIBMGA002350-PA|IPR000719|Protein kinase,
IPR002290|Serine/threonine protein kinase, IPR008271|Serine/threonine
protein kinase, active site, IPR011009|Protein kinase-like
         (252 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...   109   2e-26
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    74   1e-15
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    65   5e-13
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                55   5e-10
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    52   4e-09
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    37   2e-04
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    37   2e-04
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score =  109 bits (262), Expect = 2e-26
 Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 33/234 (14%)

Query: 33  SSLGQGKFGHVH---VAREKKTGFLVAIKTLFKSQIVKSKCERQVMREIEIQSHLKHSNI 89
           ++LG G FG V    +A +    F  A+K + K+QIV+++ ++ +M E  I        +
Sbjct: 371 ATLGVGGFGRVELVQIAGDSSRSF--ALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFV 428

Query: 90  LRLLTWFHDERRIYLVVEFAAGGELYKHLTNSPQGRFPESKAARYIYQVADAVEYCHQHH 149
           ++L   F D + +Y+++E   GGEL+  L +  +G F +     Y   V +A +Y H  +
Sbjct: 429 VKLFKTFKDRKYLYMLMEACLGGELWTVLRD--KGHFDDGTTRFYTACVVEAFDYLHSRN 486

Query: 150 VIHRDIKPENILVAFSGDLKLADFEMIKR-------------------EV-----YDVSV 185
           +I+RD+KPEN+L+   G +KL DF   KR                   EV     +D+S 
Sbjct: 487 IIYRDLKPENLLLDSQGYVKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVILNKGHDISA 546

Query: 186 DHWCIGVLLYEFLVGKPPFETEGEDKTYARIL-SLD-IVYPSHIPDGAKDLISK 237
           D+W +GVL++E L G PPF      KTY  IL  +D I +P  I   A  LI K
Sbjct: 547 DYWSLGVLMFELLTGTPPFTGGDPMKTYNIILKGIDAIEFPRSITRNATALIKK 600


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 28/128 (21%)

Query: 126 FPESKAARYIYQVADAVEYCHQHHVIHRDIKPENILVAFSGD---LKLADF--------- 173
           + E+ A+  I Q+ ++V +CH + V+HRD+KPEN+L+A       +KLADF         
Sbjct: 6   YSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLASKAKGAAVKLADFGLAIEVQGE 65

Query: 174 ----------------EMIKREVYDVSVDHWCIGVLLYEFLVGKPPFETEGEDKTYARIL 217
                           E++K+E Y   VD W  GV+LY  LVG PPF  E + + YA+I 
Sbjct: 66  AQAWFGFAGTPGYLSPEVLKKEPYGKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIK 125

Query: 218 SLDIVYPS 225
           +    YPS
Sbjct: 126 TGSYDYPS 133


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 65.3 bits (152), Expect = 5e-13
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 45  VAREKKTGFLVAIKTLFKSQIVKSKCERQVMREIEIQS-HLKHSNILRLLTWFHDERRIY 103
           +A  K T  L AIK L K  I++       M E  + +   K   +++L + F    R+Y
Sbjct: 2   LAERKGTDELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLY 61

Query: 104 LVVEFAAGGELYKHLTNSPQGRFPESKAARYIYQVADAVEYCHQHHVIHRDIKPENILVA 163
            V+E+  GG+L   +     G+F E  A  Y  ++A  + + H   +++RD+K +N+L+ 
Sbjct: 62  FVMEYVNGGDLMYQIQQC--GKFKEPVAVFYASEIAIGLFFLHGRGIVYRDLKLDNVLLD 119

Query: 164 FSGDLKLADFEMIKREV 180
             G +K+ADF M K  +
Sbjct: 120 QDGHIKIADFGMCKEGI 136


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 55.2 bits (127), Expect = 5e-10
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 12/142 (8%)

Query: 32  GSSLGQGKFGHVHVAREKKTGFLVAIKTLFKSQIVKSKCERQVMREIEIQSHLKHSNILR 91
           G+ LG G FG V+ A  K  G  VA K      I++++    ++   +  S LKHSNI++
Sbjct: 70  GTFLGSGGFGIVYKALYK--GEQVAAK------IIQTEKYSNMLNSEKHASFLKHSNIVK 121

Query: 92  LLTWFHDERRIYLVVEFAAGGELYKHLTNSPQGRFPESKAARYIYQVADAVEYCHQHHVI 151
           +L        + L+     G  L   L    +    +++    +  +  A+++CH   ++
Sbjct: 122 VLM-IEQGASLSLITMELCGTTLQNRLD---EAILIKNERICILKSITCALQFCHNAGIV 177

Query: 152 HRDIKPENILVAFSGDLKLADF 173
           H D+KP+NIL++ +G  KL DF
Sbjct: 178 HADVKPKNILMSKNGQPKLTDF 199


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 52.4 bits (120), Expect = 4e-09
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 9/151 (5%)

Query: 35  LGQGKFGHVHVAREK-----KTGFLVAIKTLFKSQIVKSKCERQVMREIEIQSHLKHSNI 89
           +G G+FG V   + K     +T   VAIKTL      K++     + E  I    +H N+
Sbjct: 639 IGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLKPGSADKAR--NDFLTEASIMGQFEHPNV 696

Query: 90  LRLLTWFHDERRIYLVVEFAAGGELYKHLTNSPQGRFPESKAARYIYQVADAVEYCHQHH 149
           + L         + ++ EF   G L   L  +  G+F   +    +  +A  ++Y  + +
Sbjct: 697 IFLQGVVTKSNPVMIITEFMENGSLDTFL-RANDGKFQVLQLVGMLRGIASGMQYLAEMN 755

Query: 150 VIHRDIKPENILVAFSGDLKLADFEMIKREV 180
            +HRD+   N+LV  +   K+ADF  + RE+
Sbjct: 756 YVHRDLAARNVLVNAALVCKIADFG-LSREI 785


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 138 VADAVEYCHQHHVIHRDIKPENILVAFSGDLKLADFEMIKREV 180
           V + + Y H   ++HRD+K +N+L+      KL DF     EV
Sbjct: 706 VLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFGFCITEV 748


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 138 VADAVEYCHQHHVIHRDIKPENILVAFSGDLKLADFEMIKREV 180
           V + + Y H   ++HRD+K +N+L+      KL DF     EV
Sbjct: 744 VLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFGFCITEV 786


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITN 157


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITN 157


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITN 157


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITN 157


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITN 157


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITN 157


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 199 SWTYDGNQVDLVLSSETGGDLSDFITN 225


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ LV+    GG+L   +TN
Sbjct: 199 SWTYDGNQVDLVLSSETGGDLSDFITN 225


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 160  ILVAFSGDLKLADFEMIKREVYDVSVDHWCIGVLLYE 196
            I+ A   D+KL+DF     ++ D + +   I  + YE
Sbjct: 1403 IMDAHFKDVKLSDFGFSTEDILDTADEDLLINNVFYE 1439


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 94  TWFHDERRIYLVVEFAAGGELYKHLTN 120
           +W +D  ++ L ++  AGG++   +TN
Sbjct: 168 SWTYDGFQLDLQLQDEAGGDISSFITN 194


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,422
Number of Sequences: 429
Number of extensions: 3038
Number of successful extensions: 29
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 22
length of query: 252
length of database: 140,377
effective HSP length: 56
effective length of query: 196
effective length of database: 116,353
effective search space: 22805188
effective search space used: 22805188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)