GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002349-TA|BGIBMGA002349-PA|IPR012307|Xylose
isomerase-like TIM barrel
         (260 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.1  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   3.1  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   9.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.3  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 139 LIEPINQYSMPKYFLSDYG 157
           LIE  + Y  PK  LSD+G
Sbjct: 247 LIEDFSGYIKPKCVLSDHG 265


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 221 KYVLEHLAKSGYDEWVGLEYK 241
           K V++HL K+  D W  LE K
Sbjct: 86  KTVIQHLYKNKQDWWKQLEAK 106


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 219 NYKYVLEHLAKSGYDEWVGLEYK 241
           N + VL HL  +  D W  LE K
Sbjct: 80  NVRKVLHHLIDNKPDMWKQLEAK 102


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 197 YIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGL 238
           Y+  V +A +P     D P   N   V+  +    +  W G+
Sbjct: 169 YLLTVAVAAIPTDAAYDVPAMSNVLDVINVMTYDFHGSWAGV 210


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,955
Number of Sequences: 317
Number of extensions: 2609
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 260
length of database: 114,650
effective HSP length: 56
effective length of query: 204
effective length of database: 96,898
effective search space: 19767192
effective search space used: 19767192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)