Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002349-TA|BGIBMGA002349-PA|IPR012307|Xylose
isomerase-like TIM barrel
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.39
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 29 0.68
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 28 1.2
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 2.1
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 27 3.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 6.3
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 6.3
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 26 6.3
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 8.3
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 8.3
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.39
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 155 DYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDT 214
D+ DII + + L F+L+Q +T + L P I H ++ ++ ++E +T
Sbjct: 1382 DHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSE-NT 1440
Query: 215 PGEINYKYVLEHL 227
P +N+ ++HL
Sbjct: 1441 PLILNFMVAIQHL 1453
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 109 VENPTPKHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDS 168
+ENP+ + N+L+++ + +N ++E I+ P++F+ A D K + S
Sbjct: 444 LENPSSIEYNIIS-NILFSIPTIPLKNASPIVELISYVMKPEFFMKSQQNASDCKKLLSS 502
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 8 SFMFAEASSIL---ERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGL 54
+F F ++S + E +AKDAG A SGF GFS N+ Q A +
Sbjct: 963 AFSFGASNSSMNKEENTPMAKDAGDTAPASGFKSGFSF-GANNSPQPASM 1011
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 38 FGFSLEQVRNAKQSAGLQQIAINLKTGDTTKGEVGVTSVPG 78
FG +LE+ R A + A L +A ++ G G+VG + G
Sbjct: 113 FGMALEKQRTAGKKAELIAVADDVSVGRKKSGKVGRRGLSG 153
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 SLEQVRNAKQSAGLQQIAINLKTGDTTKGEVGV 73
+L Q KQ+AG+ NL TG T E+G+
Sbjct: 403 TLAQAALVKQAAGVSVFVGNLGTGSQTWAELGI 435
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 85 TNLNTTIEYAKALDAKKIHIMAGKV 109
T+LNT+I++ + + A IH+ KV
Sbjct: 179 TDLNTSIKFTENISANAIHVNQDKV 203
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 158 RAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 198
R + I++ I PN+ ++ FH + D TH + LL Y+
Sbjct: 65 RELQIMRAISHPNIIKLIAFFHTHNPSKDETH-LCLLLEYM 104
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 153 LSDYGRAVD-IIKRIDSPNLRLMLDIFHLQQIAGDITHNI 191
+SD+ +D +KRI P +R LD HL+ IA T I
Sbjct: 96 MSDFAIGLDPSLKRI-LPEIRFRLDFQHLKSIAKGATSTI 134
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 118 ETFEKNLLYAVDVLKGENI 136
E FEKN+L +V+ + GEN+
Sbjct: 220 EKFEKNILASVNAVFGENL 238
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 25 KDAGFKAVESGFPFGFSLEQVRNAK-QSAGLQQIAI 59
K+AG+ E+GF +E+ N K +++GL+ AI
Sbjct: 662 KEAGYVVTEAGFASDIGMEKFFNIKCRTSGLKPDAI 697
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,897
Number of Sequences: 5004
Number of extensions: 52704
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 10
length of query: 260
length of database: 2,362,478
effective HSP length: 71
effective length of query: 189
effective length of database: 2,007,194
effective search space: 379359666
effective search space used: 379359666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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