Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002349-TA|BGIBMGA002349-PA|IPR012307|Xylose
isomerase-like TIM barrel
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107... 33 0.23
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 33 0.23
07_03_1344 - 25912639-25914060 31 0.70
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 29 2.8
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 29 2.8
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 29 2.8
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 29 2.8
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 28 6.6
12_01_0280 + 2027708-2028169,2028287-2028403,2028493-2029746 28 8.7
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 28 8.7
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 28 8.7
01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801 28 8.7
>12_01_0138 -
1069616-1069894,1070056-1070607,1070689-1071046,
1071214-1071503,1072257-1072360,1072419-1072575,
1073229-1073273,1073636-1073692
Length = 613
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 71 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 125
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 271 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 323
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 71 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 125
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 334 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 386
>07_03_1344 - 25912639-25914060
Length = 473
Score = 31.5 bits (68), Expect = 0.70
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 26 DAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGDTTKGEVGV 73
+AG A+ S VR ++A + Q ++ L TG+T GE+GV
Sbjct: 244 EAGIGAIASQLADRLPAGSVRLNSRAAAIGQSSVTLDTGETVSGELGV 291
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 156 YGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 198
YG VD +K + SP + + D H+ A ++ H++ + P I
Sbjct: 539 YGAIVDSMKTLSSPEMHIHFD--HIWSYAPELAHDLCQCYPRI 579
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 156 YGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 198
YG VD +K + SP + + D H+ A ++ H++ + P I
Sbjct: 539 YGAIVDSMKTLSSPEMHIHFD--HIWSYAPELAHDLCQCYPRI 579
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 156 YGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 198
YG VD +K + SP + + D H+ A ++ H++ + P I
Sbjct: 539 YGAIVDSMKTLSSPEMHIHFD--HIWSYAPELAHDLCQCYPRI 579
>01_06_1742 -
39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 159 AVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITK 193
AV +++RI S N R +L IF Q GD+ H K
Sbjct: 798 AVKLMRRIYSENKRELLGIFDSDQNVGDLIHLANK 832
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/58 (18%), Positives = 30/58 (51%)
Query: 119 TFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLD 176
TF +N+ + D+ N+ L+E +Y + + + + ++ ++ I + R+++D
Sbjct: 898 TFIENMGISCDIPHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVD 955
>12_01_0280 + 2027708-2028169,2028287-2028403,2028493-2029746
Length = 610
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 58 AINLKTGDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHW 117
A+NL+T D GE V P K+ NL + +E+ K+ KI + A +P
Sbjct: 172 AVNLETEDVV-GEAPVKGSPSKKFLCGQNLRSDLEHHKSGKLSKIGLTAKCCPSPD---- 226
Query: 118 ETFEKNLLYAVDVLKG 133
+F+++ L + +G
Sbjct: 227 SSFDQSTLLCEAIARG 242
>09_06_0244 +
21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 16 SILERYALAKDAG-FKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLK 62
++ E+ + +D+G FK ++SGF GFS + V S L + + K
Sbjct: 870 TVKEKASACRDSGIFKELKSGFSSGFSSDVVTKFSASPELNKYGLEHK 917
>04_03_0199 -
12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 178 FHLQQIAGDITHN-ITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSG 231
FHL + +TH + L H+Q+ + + P P +IN L HLA+ G
Sbjct: 537 FHL--LLERVTHEALPHALSKCYHLQVLDIGSYGSPLIPDDINNLVSLRHLAQKG 589
>01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801
Length = 721
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 155 DYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 198
++ RAV+ I + P LR+M D+ + G I ++TK++ I
Sbjct: 442 EFWRAVEEIAAVSEPLLRVMRDVLGGKAAIGYIYESMTKVMDSI 485
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.136 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,809
Number of Sequences: 37544
Number of extensions: 297377
Number of successful extensions: 624
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 14
length of query: 260
length of database: 14,793,348
effective HSP length: 81
effective length of query: 179
effective length of database: 11,752,284
effective search space: 2103658836
effective search space used: 2103658836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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