GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002349-TA|BGIBMGA002349-PA|IPR012307|Xylose
isomerase-like TIM barrel
         (260 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)         124   6e-29
SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)                    30   2.2  
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)                     29   5.1  
SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)    29   5.1  
SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
          Length = 260

 Score =  124 bits (300), Expect = 6e-29
 Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 5/256 (1%)

Query: 1   MKFCANLSFMFAEASSILERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAIN 60
           MK  ANLS +F E   ++ER   A  AGF  VE  FP+     +++ A ++AG+    IN
Sbjct: 1   MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59

Query: 61  LKTGDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKV-ENPTPKH-WE 118
           L  GD   G  G+ ++P ++ EF   L   + YA  +    ++++ G++ +   P+    
Sbjct: 60  LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119

Query: 119 TFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 178
               NL    +  +   I  ++E IN   +P + ++   +   ++K +  PNL    D++
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHPNLAAQYDLY 179

Query: 179 HLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGL 238
           H+ +   D+   I  L   IGHVQ A  P R  P T GE+ +  +L  L  SGY  W+  
Sbjct: 180 HMARQGLDVQAGIVLLAGRIGHVQFADYPGRGAPGT-GELQFAPLLTALRDSGYQGWLAA 238

Query: 239 EYK-AIGNTKDGLTWI 253
           EY+     T+  L W+
Sbjct: 239 EYRPGEAGTQASLGWL 254


>SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 73  VTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWET---FEKNLLYAVD 129
           + SV   E+ ++ +L+ +++ +KA  ++ + +M GK  +PT + W+T   F  N L+  +
Sbjct: 84  ILSVRDNEEIWRKSLDKSLQVSKA-SSRSLWMMVGKQISPTGRKWKTIQDFISNTLFLKN 142

Query: 130 VLKGENI 136
             K  NI
Sbjct: 143 TDKDSNI 149


>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
          Length = 262

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 179 HLQQIAGDITHNITKLLPYIG---HVQIAQVPNRNEPDT 214
           H QQ+A +IT+N  K  P IG   H Q AQ    N P T
Sbjct: 210 HHQQLAQNITNNRPKTSPTIGPKHHQQSAQNNTNNRPKT 248


>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 226

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 158 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 189
           R + ++K+ID+   PN+  +LDIFH+  +    TH
Sbjct: 52  REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86


>SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 200 HVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGLEYKAIGNTKD 248
           H+ I    ++         +YK  L    KS  D+W G  +  IGNT D
Sbjct: 569 HILIGNTHDQQGKYEEARGHYKEALRLYQKSSDDQWQGKAHILIGNTHD 617


>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
          Length = 638

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 153 LSDYGRAVDII--KRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRN 210
           ++  G AV +I  + I  P  +L L  FH+  +AG ++   + +  + G +++  +    
Sbjct: 508 MTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGLSEESSIITKFKGRLEVEDLKTVK 567

Query: 211 EPDTPGE 217
             D  G+
Sbjct: 568 GEDADGK 574


>SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 210 NEPDTPG----EINYKYVLEHLAKSGYDEWVGLEYKAIGNTKDGLTWINNYGYSL 260
           N+ D PG     I +K  LEHL K+       LE +A+GN +   T I+ + + L
Sbjct: 30  NDVDLPGVWFFRIPHKVTLEHLVKNAARRCWCLEAEALGNRRSS-TIIDLFSFPL 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,676,730
Number of Sequences: 59808
Number of extensions: 346104
Number of successful extensions: 606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 13
length of query: 260
length of database: 16,821,457
effective HSP length: 81
effective length of query: 179
effective length of database: 11,977,009
effective search space: 2143884611
effective search space used: 2143884611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)