GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002349-TA|BGIBMGA002349-PA|IPR012307|Xylose
isomerase-like TIM barrel
         (260 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.1  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 38  FGFSLEQVRNAKQSAGLQQIAINLKTGDTT 67
           FG  ++ V N      + +  +NLK+G  T
Sbjct: 525 FGHEVDLVHNYMNFMQMDEFVVNLKSGSNT 554


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 38  FGFSLEQVRNAKQSAGLQQIAINLKTGDTT 67
           FG  ++ V N      + +  +NLK+G  T
Sbjct: 151 FGHEVDLVHNYMNFMQMDEFVVNLKSGSNT 180


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,632
Number of Sequences: 429
Number of extensions: 3302
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 260
length of database: 140,377
effective HSP length: 56
effective length of query: 204
effective length of database: 116,353
effective search space: 23736012
effective search space used: 23736012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)