GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002348-TA|BGIBMGA002348-PA|IPR001816|Elongation factor
Ts
         (174 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.2  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   9.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    20   9.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   9.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 154  VPESCMPGVEKQPLE 168
            VP++C PG+   P E
Sbjct: 1230 VPQNCAPGLHYNPEE 1244



 Score = 20.2 bits (40), Expect = 9.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 83   EDIGRQLCQHIV 94
            EDI   LC HIV
Sbjct: 1420 EDIDPDLCTHIV 1431


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
          protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 82 VEDIGRQLCQHIV 94
          VEDI   LC H++
Sbjct: 41 VEDIDPTLCTHLI 53


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 153 EVPESCMPGVEKQPLETVQT 172
           E+P   +P  E QP +T ++
Sbjct: 390 EIPPEPVPTPEPQPTQTTES 409


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 83  EDIGRQLCQHIV 94
           EDI   LC HI+
Sbjct: 544 EDINPSLCTHII 555


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,447
Number of Sequences: 317
Number of extensions: 1578
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 114,650
effective HSP length: 53
effective length of query: 121
effective length of database: 97,849
effective search space: 11839729
effective search space used: 11839729
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)