GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002348-TA|BGIBMGA002348-PA|IPR001816|Elongation factor
Ts
         (174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    32   0.054
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    31   0.072
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   1.2  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   3.6  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.7  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 31.9 bits (69), Expect = 0.054
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 100 KIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEII 144
           K+GD + ++  +  D++ C    + ++ P Y I+E+L  H VE+I
Sbjct: 279 KLGDIKINEEVQQKDEQECP--GDKVIPPEYAIQEVLWSHVVEVI 321


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 31.5 bits (68), Expect = 0.072
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 82  VEDIGRQLCQHIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNV 141
           ++D+  ++C H    A T             +D+ TCL  ++YL   +Y  ++ L+  N 
Sbjct: 366 LQDVLNEVC-HETMLADTDAETSNNSIMIMCADERTCLQLRDYLSTVTYDNKDSLKNMNS 424

Query: 142 EIIDYVRF 149
           +++DY ++
Sbjct: 425 KLVDYFQW 432


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 86  GRQLCQH-IVGCAPTKIG--DKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVE 142
           GR+L  +  +G A  ++   D++ D           L+FQ+   +     EEIL+K N+E
Sbjct: 583 GRKLLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIE 642

Query: 143 IIDYVR 148
           + D  R
Sbjct: 643 VGDLKR 648


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 19  LSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXXXXXXGKYGALLAYKQ 78
           L E +       GE   ++R  C  A      I  ++H A         G+ G+++    
Sbjct: 180 LEEEIVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQSSPLQQLGRIGSMVQINS 239

Query: 79  P-NDVEDIGRQLCQHIVGCAPTKIGD 103
             +  + +  Q+ + IV   P+   +
Sbjct: 240 DLSTRKGLSNQIAKEIVAQDPSSTSE 265


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 114 DDETCLIFQEYLLDPSYTIEEILQKHNVEII 144
           D  T L FQ YL D  Y IE++  K N +I+
Sbjct: 100 DFTTLLNFQRYL-DLGYGIEDVKIKENEDIV 129


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,422
Number of Sequences: 5004
Number of extensions: 32740
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 6
length of query: 174
length of database: 2,362,478
effective HSP length: 68
effective length of query: 106
effective length of database: 2,022,206
effective search space: 214353836
effective search space used: 214353836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)