GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002348-TA|BGIBMGA002348-PA|IPR001816|Elongation factor
Ts
         (174 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0055 + 26030562-26032571                                         29   2.1  
08_01_0838 - 8185083-8185910                                           28   3.6  
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233...    28   3.6  
10_08_0289 + 16534063-16534100,16534219-16534243,16534847-165349...    27   6.3  
02_05_0934 - 32851709-32853398,32854458-32854738                       27   6.3  
02_01_0546 + 4024793-4025025,4026259-4026372,4026482-4026577,402...    27   8.3  

>01_06_0055 + 26030562-26032571
          Length = 669

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 70  YGALLAYKQPNDVEDIGRQLCQHIVGCAPTKIG 102
           +G+LLA  + +   D+G+ + QHIV  AP  +G
Sbjct: 596 WGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVG 628


>08_01_0838 - 8185083-8185910
          Length = 275

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 100 KIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTI 132
           K+GD E+++     ++E C  F E  +DP + +
Sbjct: 104 KLGDAEEEEDDDEDEEEKCRRFAEKCIDPYFIV 136


>02_01_0331 +
           2331774-2331985,2332825-2332952,2333392-2333452,
           2333878-2334035,2335001-2335083,2336364-2336468,
           2336659-2336756,2337136-2337256,2337366-2337416,
           2337987-2338179,2338277-2338845,2338964-2339017,
           2339250-2339412,2340155-2340417,2340530-2340717,
           2341875-2341945,2342021-2342309,2343962-2344027,
           2344186-2344303,2344468-2344575,2344656-2344805,
           2344892-2345065,2345161-2345232
          Length = 1164

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 80  NDVEDIGRQLCQHIVGCAPTKIGDKEKDKPAKNSDDETC 118
           ND +++ R        C P ++G+  K+    +SDD+ C
Sbjct: 933 NDSKELERVFAAIAQQCCPNRVGNSGKNLLLPSSDDDAC 971


>10_08_0289 +
           16534063-16534100,16534219-16534243,16534847-16534978,
           16535255-16535441,16536014-16536189,16536282-16536377,
           16536511-16536615,16536654-16536683,16536698-16536784,
           16536874-16536963,16537033-16537113,16537200-16537268,
           16537413-16537490,16537578-16537673,16537981-16538080,
           16538208-16538311,16538396-16538501,16538595-16538673,
           16538861-16538963
          Length = 593

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 7   QLGTLHAEGGKKLSEILALFIGSVGENAVLRRAE 40
           Q+GT+ A G +++ E++A  +  VG+  V+  A+
Sbjct: 186 QVGTISANGEREIGELIAKAMEKVGKEGVITIAD 219


>02_05_0934 - 32851709-32853398,32854458-32854738
          Length = 656

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 91  QHIVGCAPTKIGD-KEKDKPAKNSDDETCLIFQEYLL 126
           Q ++GC+ T++   KE++ P + +D     +FQEYLL
Sbjct: 576 QELLGCSATELNALKEREDP-RFADTMLNCLFQEYLL 611


>02_01_0546 +
           4024793-4025025,4026259-4026372,4026482-4026577,
           4026780-4026822,4026958-4027098,4027235-4027315,
           4028032-4028130,4028225-4028350
          Length = 310

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 93  IVGCAPTKIGDKEKDKPAKNSDDET-----CLIFQEYLLDPSYTI-EEILQKHNVEII 144
           +VGC   ++  K K +     D+       C    E + D  + + EE L KHN++ +
Sbjct: 85  LVGCCNDELTHKYKGRTVMTEDERYESLRHCKWVDEVIPDAPWVVTEEFLNKHNIDFV 142


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,207,727
Number of Sequences: 37544
Number of extensions: 205829
Number of successful extensions: 363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 6
length of query: 174
length of database: 14,793,348
effective HSP length: 77
effective length of query: 97
effective length of database: 11,902,460
effective search space: 1154538620
effective search space used: 1154538620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)