GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002348-TA|BGIBMGA002348-PA|IPR001816|Elongation factor
Ts
         (174 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29420| Best HMM Match : EF_TS (HMM E-Value=0.0031)                  55   3e-08
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  

>SB_29420| Best HMM Match : EF_TS (HMM E-Value=0.0031)
          Length = 86

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 85  IGRQLCQHIVGCAPTKIGDK-EKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEI 143
           +  +L QH+VG  P  IG   E D+    S+    L+ QEYLLD S T+ +  +K  V++
Sbjct: 19  LANKLAQHVVGMNPKVIGQGGEADEKGGESE---ALLDQEYLLDGSLTVGQFTEKEGVQV 75

Query: 144 IDYVRFSCG 152
           +D+VR+ CG
Sbjct: 76  VDFVRYECG 84


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/79 (24%), Positives = 33/79 (41%)

Query: 82  VEDIGRQLCQHIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNV 141
           +ED+ ++    +   + T  G  +K  P  N   E    + + LL P+ T      ++  
Sbjct: 132 LEDLAKETNGSLHVISLTMFGRIQKVTPVFNQKSEFLRSYSQDLLSPNITPTFSSDENTK 191

Query: 142 EIIDYVRFSCGEVPESCMP 160
             ID+  +S  E P S  P
Sbjct: 192 SNIDFKNYSYSERPTSAPP 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,979,858
Number of Sequences: 59808
Number of extensions: 241925
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 16,821,457
effective HSP length: 77
effective length of query: 97
effective length of database: 12,216,241
effective search space: 1184975377
effective search space used: 1184975377
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)