GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002348-TA|BGIBMGA002348-PA|IPR001816|Elongation factor
Ts
         (174 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051938-1|AAK93362.1|  318|Drosophila melanogaster LD41866p pro...   170   1e-42
AE014134-2862|AAF53625.1|  318|Drosophila melanogaster CG6412-PA...   170   1e-42
AE013599-2048|AAF58145.1|  532|Drosophila melanogaster CG16801-P...    29   4.6  
AE013599-2047|AAM68536.1|  744|Drosophila melanogaster CG16801-P...    29   4.6  
AE014134-789|AAF50967.3|  790|Drosophila melanogaster CG31660-PB...    28   6.0  
AE014134-788|AAX52647.1|  944|Drosophila melanogaster CG31660-PC...    28   6.0  

>AY051938-1|AAK93362.1|  318|Drosophila melanogaster LD41866p
           protein.
          Length = 318

 Score =  170 bits (413), Expect = 1e-42
 Identities = 83/165 (50%), Positives = 109/165 (66%), Gaps = 7/165 (4%)

Query: 4   DSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXX 63
           D++ L  L  E G+ L + LAL IG++GENA +RRA C+KAN+ D+K+ GY HPAP    
Sbjct: 146 DADALRNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANN-DLKLVGYAHPAPTNVG 204

Query: 64  XXXX----GKYGALLAYKQPNDVEDIG--RQLCQHIVGCAPTKIGDKEKDKPAKNSDDET 117
                   GKYGA++AY+  + + D    + +CQ IVG  PTKIG+ +KDKPA+N DDET
Sbjct: 205 TTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGEYDKDKPAENKDDET 264

Query: 118 CLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCGEVPESCMPGV 162
           CLI QEYLLD   T+ E LQ+HN EI+DY RF CGE  E  +  +
Sbjct: 265 CLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGEHTERSLEAI 309


>AE014134-2862|AAF53625.1|  318|Drosophila melanogaster CG6412-PA
           protein.
          Length = 318

 Score =  170 bits (413), Expect = 1e-42
 Identities = 83/165 (50%), Positives = 109/165 (66%), Gaps = 7/165 (4%)

Query: 4   DSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXX 63
           D++ L  L  E G+ L + LAL IG++GENA +RRA C+KAN+ D+K+ GY HPAP    
Sbjct: 146 DADALRNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANN-DLKLVGYAHPAPTNVG 204

Query: 64  XXXX----GKYGALLAYKQPNDVEDIG--RQLCQHIVGCAPTKIGDKEKDKPAKNSDDET 117
                   GKYGA++AY+  + + D    + +CQ IVG  PTKIG+ +KDKPA+N DDET
Sbjct: 205 TTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGEYDKDKPAENKDDET 264

Query: 118 CLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCGEVPESCMPGV 162
           CLI QEYLLD   T+ E LQ+HN EI+DY RF CGE  E  +  +
Sbjct: 265 CLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGEHTERSLEAI 309


>AE013599-2048|AAF58145.1|  532|Drosophila melanogaster CG16801-PA,
           isoform A protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 95  GCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSC 151
           GCA   + +   +    N++ +TC+  +E   D   T+ EI  K+   ++D   F+C
Sbjct: 395 GCALFSVAE-HCNNLENNANGDTCITKEELAADVR-TLHEIFCKYKAVLVDPAEFAC 449


>AE013599-2047|AAM68536.1|  744|Drosophila melanogaster CG16801-PB,
           isoform B protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 95  GCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSC 151
           GCA   + +   +    N++ +TC+  +E   D   T+ EI  K+   ++D   F+C
Sbjct: 607 GCALFSVAE-HCNNLENNANGDTCITKEELAADVR-TLHEIFCKYKAVLVDPAEFAC 661


>AE014134-789|AAF50967.3|  790|Drosophila melanogaster CG31660-PB,
           isoform B protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 106 KDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIID-YVRFSCGEVPESC 158
           ++KPA   D  TCL  + Y L P+ T++   +   VE+ + Y  +SC   P  C
Sbjct: 455 ENKPAATRDVYTCLCRESYYL-PNSTLQG-FRGDRVELSEGYDNYSCIPCPGGC 506


>AE014134-788|AAX52647.1|  944|Drosophila melanogaster CG31660-PC,
           isoform C protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 106 KDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIID-YVRFSCGEVPESC 158
           ++KPA   D  TCL  + Y L P+ T++   +   VE+ + Y  +SC   P  C
Sbjct: 455 ENKPAATRDVYTCLCRESYYL-PNSTLQG-FRGDRVELSEGYDNYSCIPCPGGC 506


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,880,892
Number of Sequences: 52641
Number of extensions: 360977
Number of successful extensions: 401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 6
length of query: 174
length of database: 24,830,863
effective HSP length: 80
effective length of query: 94
effective length of database: 20,619,583
effective search space: 1938240802
effective search space used: 1938240802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)