Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002348-TA|BGIBMGA002348-PA|IPR001816|Elongation factor
Ts
(174 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical pr... 79 2e-15
D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation fact... 79 2e-15
AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical ... 28 4.2
Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z78419-4|CAB01700.1| 226|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and inte... 27 9.6
AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and inte... 27 9.6
>Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical
protein F55C5.5 protein.
Length = 316
Score = 79.0 bits (186), Expect = 2e-15
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 26/169 (15%)
Query: 8 LGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXXXXXX 67
LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 148 LGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KDGTDDIPM 205
Query: 68 GKYGALLAYKQ--PNDV--EDIGRQLCQHIVGCAPTKIGD-----------KEKDKPAKN 112
G++ +L+A Q P + + + Q+CQHI+G +P +G+ + ++ N
Sbjct: 206 GRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGEAAESVKTQEGLRSQEGHDPN 265
Query: 113 SD---------DETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCG 152
+D ET L+ Q ++L+PS ++ E L+ HN I+D+VR G
Sbjct: 266 ADPVVVTNIDESETALLRQAFMLNPSQSVHEYLKSHNANILDFVRVELG 314
>D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation factor
Ts homologue protein.
Length = 316
Score = 79.0 bits (186), Expect = 2e-15
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 26/169 (15%)
Query: 8 LGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXXXXXX 67
LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 148 LGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KDGTDDIPM 205
Query: 68 GKYGALLAYKQ--PNDV--EDIGRQLCQHIVGCAPTKIGD-----------KEKDKPAKN 112
G++ +L+A Q P + + + Q+CQHI+G +P +G+ + ++ N
Sbjct: 206 GRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGEAAESVKTQEGLRSQEGHDPN 265
Query: 113 SD---------DETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCG 152
+D ET L+ Q ++L+PS ++ E L+ HN I+D+VR G
Sbjct: 266 ADPVVVTNIDESETALLRQAFMLNPSQSVHEYLKSHNANILDFVRVELG 314
>AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical
protein T28F2.4a protein.
Length = 748
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 100 KIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIID---YVRFSCGEVPE 156
K +K K+K KN + T L+ E +Y +EE ++ V +I + F EV E
Sbjct: 105 KEDEKSKNKKMKNQNKHTALVQNETSTRSTYFVEEPDNENKVTLISNGREIAFKKTEVVE 164
Query: 157 S 157
S
Sbjct: 165 S 165
>Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical
protein F54G8.5 protein.
Length = 844
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 99 TKIGDKEKDKPAKNSDDETCLIFQ-EYLLD---PSYTIEEILQKHNVEIIDYV 147
T +GD +N DDE C + + L+ P + I+ +L+ N++ D+V
Sbjct: 129 TSLGDNVASNCLRNKDDEACTMHPIAFALEDTTPEFAIQFLLRYPNLKFGDFV 181
>Z78419-4|CAB01700.1| 226|Caenorhabditis elegans Hypothetical
protein F26A3.4 protein.
Length = 226
Score = 26.6 bits (56), Expect = 9.6
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 1 MELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 60
+EL S+Q+ L A+GGK +L + V +A + A K +++ A + +
Sbjct: 77 LELQSDQIQALIADGGK----VLVHCVAGVSRSASICLAFLLKYRCRNLREAYHLMKSKR 132
Query: 61 XXXXXXXGKYGALLAYKQPNDVEDIG 86
G + L+AY+Q N E+ G
Sbjct: 133 SMVRPNLGFWRQLIAYEQ-NVKENAG 157
>Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical
protein F13B10.1e protein.
Length = 801
Score = 26.6 bits (56), Expect = 9.6
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 69 KYGALL--AYKQPNDVEDIGRQLCQHIVGCAPT-KIGDKEKDKPAKNSDDETCLIFQEYL 125
KY A++ A+++ VED I GC K+ K + P ++D L +YL
Sbjct: 83 KYQAMMDKAFEEIAKVED-----ANIIEGCTIVRKLMRKVWNTPKVSADLANALC--DYL 135
Query: 126 LDPSY--TIEEILQKHNVEIIDYVRFSCGEVPESC 158
D Y + ++ N D VR CG+V E C
Sbjct: 136 RDRDYFDKLIKMFISPNTAACDQVRMECGKVLEEC 170
>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
protein F13B10.1c protein.
Length = 1000
Score = 26.6 bits (56), Expect = 9.6
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 69 KYGALL--AYKQPNDVEDIGRQLCQHIVGCAPT-KIGDKEKDKPAKNSDDETCLIFQEYL 125
KY A++ A+++ VED I GC K+ K + P ++D L +YL
Sbjct: 266 KYQAMMDKAFEEIAKVED-----ANIIEGCTIVRKLMRKVWNTPKVSADLANALC--DYL 318
Query: 126 LDPSY--TIEEILQKHNVEIIDYVRFSCGEVPESC 158
D Y + ++ N D VR CG+V E C
Sbjct: 319 RDRDYFDKLIKMFISPNTAACDQVRMECGKVLEEC 353
>Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical
protein F13B10.1a protein.
Length = 930
Score = 26.6 bits (56), Expect = 9.6
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 69 KYGALL--AYKQPNDVEDIGRQLCQHIVGCAPT-KIGDKEKDKPAKNSDDETCLIFQEYL 125
KY A++ A+++ VED I GC K+ K + P ++D L +YL
Sbjct: 212 KYQAMMDKAFEEIAKVED-----ANIIEGCTIVRKLMRKVWNTPKVSADLANALC--DYL 264
Query: 126 LDPSY--TIEEILQKHNVEIIDYVRFSCGEVPESC 158
D Y + ++ N D VR CG+V E C
Sbjct: 265 RDRDYFDKLIKMFISPNTAACDQVRMECGKVLEEC 299
>AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform c protein.
Length = 984
Score = 26.6 bits (56), Expect = 9.6
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 69 KYGALL--AYKQPNDVEDIGRQLCQHIVGCAPT-KIGDKEKDKPAKNSDDETCLIFQEYL 125
KY A++ A+++ VED I GC K+ K + P ++D L +YL
Sbjct: 266 KYQAMMDKAFEEIAKVED-----ANIIEGCTIVRKLMRKVWNTPKVSADLANALC--DYL 318
Query: 126 LDPSY--TIEEILQKHNVEIIDYVRFSCGEVPESC 158
D Y + ++ N D VR CG+V E C
Sbjct: 319 RDRDYFDKLIKMFISPNTAACDQVRMECGKVLEEC 353
>AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform a protein.
Length = 931
Score = 26.6 bits (56), Expect = 9.6
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 69 KYGALL--AYKQPNDVEDIGRQLCQHIVGCAPT-KIGDKEKDKPAKNSDDETCLIFQEYL 125
KY A++ A+++ VED I GC K+ K + P ++D L +YL
Sbjct: 213 KYQAMMDKAFEEIAKVED-----ANIIEGCTIVRKLMRKVWNTPKVSADLANALC--DYL 265
Query: 126 LDPSY--TIEEILQKHNVEIIDYVRFSCGEVPESC 158
D Y + ++ N D VR CG+V E C
Sbjct: 266 RDRDYFDKLIKMFISPNTAACDQVRMECGKVLEEC 300
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,458,239
Number of Sequences: 27539
Number of extensions: 182353
Number of successful extensions: 270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 12
length of query: 174
length of database: 12,573,161
effective HSP length: 77
effective length of query: 97
effective length of database: 10,452,658
effective search space: 1013907826
effective search space used: 1013907826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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