GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002347-TA|BGIBMGA002347-PA|undefined
         (149 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.37 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   3.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   3.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   3.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   3.4  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 12  ESEYEERSPEDSPKVTKKSLSTVGFRSSPE 41
           E E EE+  ++ P  +  +L  +  R+SPE
Sbjct: 72  EKESEEKKSKEKPPYSYNALIMMAIRNSPE 101


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 2   YTDTDDISDRESEYEERSPED 22
           YT+T    +    YE +SPED
Sbjct: 219 YTNTIYHQENFENYEPKSPED 239


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 10  DRESEYEERSPED-----SPKVTKK----SLSTVGFRSSPENLNNK 46
           D+  E + RS ED     SP++TKK    S+     R+SP +   K
Sbjct: 158 DKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNSPNSCEKK 203


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 10  DRESEYEERSPED-----SPKVTKK----SLSTVGFRSSPENLNNK 46
           D+  E + RS ED     SP++TKK    S+     R+SP +   K
Sbjct: 106 DKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNSPNSCEKK 151


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 10  DRESEYEERSPED-----SPKVTKK----SLSTVGFRSSPENLNNK 46
           D+  E + RS ED     SP++TKK    S+     R+SP +   K
Sbjct: 289 DKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNSPNSCEKK 334


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,872
Number of Sequences: 317
Number of extensions: 1227
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 149
length of database: 114,650
effective HSP length: 52
effective length of query: 97
effective length of database: 98,166
effective search space:  9522102
effective search space used:  9522102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)