GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002347-TA|BGIBMGA002347-PA|undefined
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   1.2  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   1.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   2.1  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   2.8  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    25   3.6  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   4.8  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   4.8  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   4.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   4.8  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   4.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   8.4  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    24   8.4  

>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 28  KKSLSTVGFRSSPENLNNKPMALRATQSFTGAIEELKAN 66
           +K L+ V F   P+ L N P   +AT + +G  +E++A+
Sbjct: 76  RKLLAAVDF---PQQLKNSPAKAKATHTSSGVTKEVRAS 111


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier
          for pyridoxine, pyridoxal, and pyridoxamine
          Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 3  TDTDDISDRESEYEERSPEDSPKV 26
          + +D I +  SEY+E+  E+SP+V
Sbjct: 34 SQSDGIHETNSEYDEKKREESPEV 57


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 12  ESEYEERSPEDSPKVTKKSL-STVGFRSSPENLNNKPMALRAT 53
           E E E  S       + K+L S++    S  NLNNKP++L +T
Sbjct: 298 EPEVETYSVSTKNSSSNKNLRSSLSKLLSTSNLNNKPLSLSST 340


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 2   YTDTDDISDRESEYEERSPEDSPKVTKKSLSTV 34
           Y  +D + +  + Y+  SP DSP+  +  L T+
Sbjct: 104 YPLSDQVENSSNIYDPSSPPDSPRKQQTHLGTI 136


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 111 VSPEVLNYHGYSFEPNQIAM-FWKKDCRKFLWKG 143
           VS      HG++    Q  +  WK+   K LWKG
Sbjct: 269 VSKTAKQVHGHTLTRGQFMLTLWKRGGPKALWKG 302


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 4   DTDDISDRESEYEERSPEDSPKVTKKSLSTVGFRSSPENLNNKPMALR 51
           +++  S+ ESE EE S  +      +      F   PE    KP  L+
Sbjct: 105 ESESESESESESEEESESEEESDESERSGPSSFLKKPEKEEAKPAGLK 152



 Score = 24.2 bits (50), Expect = 8.4
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 3   TDTDDISDRESEYEERSPEDSPKVTKKSLSTVGFRSSPENLNNKP 47
           ++  D S+ ESE E  S E+S    +   S    RS P +   KP
Sbjct: 100 SEVSDESESESESESESEEESESEEESDESE---RSGPSSFLKKP 141


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 2   YTDTDDISDRESEYE--ERSPEDSPKVTKKSLSTVGFRSSPE 41
           Y  T+D+   +   E  E+S +DS K++KK        SS E
Sbjct: 60  YLTTEDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSE 101


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
          Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 8  ISDRESEYEERSPEDSPKVTKKSLSTVGFRSSPENLNNKPMALRATQSFTGAIEELKAN 66
          I+++ SE   +   D  +  +  LS V    +  N +N+P      Q  +  IE+++ N
Sbjct: 14 ITEKTSENRRKRDSDVLQTEEVDLSNVKRIRASRNQDNRPERQSRLQRSSSLIEQVRGN 72


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 3   TDTDDISDRESEYEERSPEDSPKVTKKSLSTVGFRSSPENLNNKPMALRATQSFTGAIEE 62
           T+ +++  +    +E        +TK   +    +S+ E  +N+P  L     F G ++ 
Sbjct: 594 TENEEVLQKYENLQEELSSTRKLLTKNEAAVAEQQSNEEMHSNEPNILNLYSVFEGKVDS 653

Query: 63  LK 64
           L+
Sbjct: 654 LQ 655


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 90  LRPCGNGPFRTREKNTLALHVVSPEVLNYHGYSFEPN-QIAMFWKKDCRK 138
           L P GN      +     L+V SP ++  H Y  +PN ++ +FW     K
Sbjct: 647 LDPQGNYVSLFSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTHK 696


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 118  YHGYSFEPNQIAMFWK 133
            YHGY+    Q+  FW+
Sbjct: 3121 YHGYNVSSPQVQWFWR 3136


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 21  EDSPKVTKKSLSTVGFRSSPENLNNKPMALRATQSFT 57
           E S K  KK L+     +SP  LN   +   AT +FT
Sbjct: 370 ELSSKQMKKQLADTSSITSPLCLNTSSIVFNATVNFT 406


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,509
Number of Sequences: 5004
Number of extensions: 24827
Number of successful extensions: 79
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 15
length of query: 149
length of database: 2,362,478
effective HSP length: 67
effective length of query: 82
effective length of database: 2,027,210
effective search space: 166231220
effective search space used: 166231220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)