GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002347-TA|BGIBMGA002347-PA|undefined
         (149 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0092 + 25749070-25750638                                         30   0.67 
09_04_0460 - 17779111-17780184                                         27   4.7  
03_01_0183 - 1474202-1474276,1474511-1474627,1474791-1474847,147...    27   6.3  

>02_05_0092 + 25749070-25750638
          Length = 522

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4   DTDDISDRESEYEERSPEDSPKVTKKSLSTV 34
           DTDD  DR  E  E++P   PK T++  +T+
Sbjct: 192 DTDDDDDRYDECIEKTPSPPPKSTQQQATTL 222


>09_04_0460 - 17779111-17780184
          Length = 357

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 4   DTDDISDRESEYEERSPEDSPKVTKKSLSTVGFRSSP 40
           D+D  SD +SE    SPED  +V  K +       SP
Sbjct: 244 DSDTSSDTQSEDTAASPEDGGRVMPKPIRRSASMDSP 280


>03_01_0183 -
           1474202-1474276,1474511-1474627,1474791-1474847,
           1475149-1475196,1475313-1476101,1476516-1476646,
           1476769-1476937,1477954-1478541
          Length = 657

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 9   SDRESEYEERSPEDSP-KVTKKS-LSTVGFRSSPENLNNKPMALRATQSFTG 58
           S  +S+Y+++SP +SP ++T ++ L TV  R  P+ L +  +    T+  +G
Sbjct: 470 SPEDSKYKQKSPAESPMEITSETKLPTVLRRKYPDTLKDGFVVALRTKDNSG 521


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,123,788
Number of Sequences: 37544
Number of extensions: 141069
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 3
length of query: 149
length of database: 14,793,348
effective HSP length: 76
effective length of query: 73
effective length of database: 11,940,004
effective search space: 871620292
effective search space used: 871620292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)