GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002347-TA|BGIBMGA002347-PA|undefined
         (149 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.33 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.33 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.1  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   4.0  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   7.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   7.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 98  FRTREKNTLALHVVSPEVLNYHGY 121
           F TR   T  L  V P+V+ Y GY
Sbjct: 310 FTTRHNATCYLSHVDPDVVQYFGY 333


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 98  FRTREKNTLALHVVSPEVLNYHGY 121
           F TR   T  L  V P+V+ Y GY
Sbjct: 16  FTTRHNATCYLSHVDPDVVQYFGY 39


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 12  ESEYEERSPEDSPKVTKKSLSTVG 35
           E  YE R+    P  T K   T+G
Sbjct: 244 ERHYERRATPPQPDRTSKDQGTIG 267


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 7  DISDRESEYEERSPEDSPKV 26
          D+SD +S YE  S E   K+
Sbjct: 33 DLSDLKSMYESNSEEQMKKL 52


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 122 SFEPNQIAMFWKKDCR 137
           SF     A FW  DCR
Sbjct: 109 SFTTTVSARFWLMDCR 124


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 7  DISDRESEYEERSPEDSPK 25
          D+SD +S YE  S E   K
Sbjct: 33 DLSDLKSMYEANSEEQMKK 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,091
Number of Sequences: 429
Number of extensions: 1930
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 149
length of database: 140,377
effective HSP length: 53
effective length of query: 96
effective length of database: 117,640
effective search space: 11293440
effective search space used: 11293440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)