GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002346-TA|BGIBMGA002346-PA|IPR006140|D-isomer specific
2-hydroxyacid dehydrogenase, NAD-binding, IPR006139|D-isomer specific
2-hydroxyacid dehydrogenase, catalytic region
         (487 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    23   3.6  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    23   3.6  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    23   3.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   6.4  

>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 158 TGPEQVREASAGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199
           T PE+ + ++A  A +   +LG   L +  + V + A+ FGF
Sbjct: 8   TPPEKSQLSTADTANLINKSLGKHNLQKSFAKVVILAQIFGF 49


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 158 TGPEQVREASAGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199
           T PE+ + ++A  A +   +LG   L +  + V + A+ FGF
Sbjct: 8   TPPEKSQLSTADTANLINKSLGKHNLQKSFAKVVILAQIFGF 49


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 158 TGPEQVREASAGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199
           T PE+ + ++A  A +   +LG   L +  + V + A+ FGF
Sbjct: 8   TPPEKSQLSTADTANLINKSLGKHNLQKSFAKVVILAQIFGF 49


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 356 EMAASEIRRAIVGRIPDCLRNCVNKV 381
           EMAA+ IR  ++ R       CV+K+
Sbjct: 65  EMAANGIRPCVISRQLRVSHGCVSKI 90


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,931
Number of Sequences: 317
Number of extensions: 3348
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 487
length of database: 114,650
effective HSP length: 59
effective length of query: 428
effective length of database: 95,947
effective search space: 41065316
effective search space used: 41065316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)