GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002346-TA|BGIBMGA002346-PA|IPR006140|D-isomer specific
2-hydroxyacid dehydrogenase, NAD-binding, IPR006139|D-isomer specific
2-hydroxyacid dehydrogenase, catalytic region
         (487 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    27   1.5  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    26   2.0  
AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismuta...    24   8.0  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 142 RRTYWLANMVRE-GKKFTGPEQVREASAGC 170
           R   WL  ++++ G+K TGP  +RE +  C
Sbjct: 840 RELLWLQKLMKDVGEKTTGPIVIREDNQSC 869


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 25   LQSRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
            +QS+P+V  +D  +   ++  +++   +   DA+S S + EK LNE +  L
Sbjct: 1061 IQSKPIV--IDDSEFAGKLHAVQEKIDILVEDAKSGSGVGEKTLNEILREL 1109


>AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismutase
           2 protein.
          Length = 211

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 98  RIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTMCL--ILNLYRRTYWLANMVREGK 155
           ++  G  N  V+  G+LG    +  G      +DT + L    ++  R   +   V +  
Sbjct: 87  KVSHGAPNDQVRHVGDLGNIAADENGIAKTSYSDTVVSLYGARSVIGRAIVIHAEVDDLG 146

Query: 156 KFTGPEQVREASAGCARIRGDTLGIV 181
           K   P+ ++  +AG  R+    +GI+
Sbjct: 147 KTNHPDSLKTGNAG-GRVACGVIGIL 171


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,186
Number of Sequences: 2123
Number of extensions: 15390
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 487
length of database: 516,269
effective HSP length: 67
effective length of query: 420
effective length of database: 374,028
effective search space: 157091760
effective search space used: 157091760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)