GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002346-TA|BGIBMGA002346-PA|IPR006140|D-isomer specific
2-hydroxyacid dehydrogenase, NAD-binding, IPR006139|D-isomer specific
2-hydroxyacid dehydrogenase, catalytic region
         (487 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...   370   e-102
Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...   124   2e-28
U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    30   3.2  
Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical pr...    30   4.2  
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    29   9.7  

>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score =  370 bits (911), Expect = e-102
 Identities = 173/294 (58%), Positives = 227/294 (77%), Gaps = 2/294 (0%)

Query: 8   PKRARMD--SMRGPIANGPLQSRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTSEIHE 65
           P++A  D  SM     NGP  SRPLVALLDGRDC+VEMPILKDVATVAFCDAQST EIHE
Sbjct: 156 PQQALNDILSMTSTRMNGPSSSRPLVALLDGRDCSVEMPILKDVATVAFCDAQSTQEIHE 215

Query: 66  KVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG 125
           KVLNEAV ALM+H+I L KEDLEKFK L+++ RIG G+DNIDVKAA ELGIAVC+ PG  
Sbjct: 216 KVLNEAVAALMYHSIKLEKEDLEKFKVLKVVFRIGYGIDNIDVKAATELGIAVCHAPGDY 275

Query: 126 VEEVADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVREASAGCARIRGDTLGIVGLGR 185
           VE+VAD+T+ LIL+L+RRTYW A    E +K  G +QVRE + G  ++RG  LGI+G GR
Sbjct: 276 VEDVADSTLSLILDLFRRTYWHAKSYSETRKTIGADQVRENAVGSKKVRGSVLGILGCGR 335

Query: 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCSLNEHNH 245
           +G+AV LRA+AFG ++IFYDP++ +G +K+LG  RVYT+ + + +SDC+SLHC+L +   
Sbjct: 336 VGTAVGLRARAFGLHIIFYDPFVREGHDKALGFERVYTMDEFMSRSDCISLHCNLGDETR 395

Query: 246 HLINEFTIKQMRPGAFLVNTARGGLVDDEGLAAALKQGRIRAAALDVHENEPFN 299
            +IN  +++Q + G ++VNT+  GL+++  LAAALK G ++ AALDVH++  F+
Sbjct: 396 GIINADSLRQCKSGVYIVNTSHAGLINENDLAAALKNGHVKGAALDVHDSVRFD 449


>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score =  124 bits (298), Expect = 2e-28
 Identities = 74/205 (36%), Positives = 114/205 (55%), Gaps = 8/205 (3%)

Query: 93  LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTMCLILNLYRRTYWLANMVR 152
           L+++ R G+GVDNIDV AA    I V N P       A+ T  LIL+L R     A  ++
Sbjct: 70  LKLVGRAGTGVDNIDVPAASANKILVMNTPQANSRSAAELTCTLILSLSRHVPQAAASMK 129

Query: 153 EGKKFTGPEQVREASAGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI 212
            GK        R+   G   + G TL ++GLGRIGS VA+R +AFG  VI +DP +    
Sbjct: 130 AGK------WARKDFMG-EEVYGRTLAVLGLGRIGSEVAVRLQAFGMKVIGFDPMVTKEQ 182

Query: 213 EKSLGLTRVYTLQDLLFQSDCVSLHCSLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272
            ++  +  + +L+ +  Q+D +++H  L +   +LIN+ T+ + + G  ++N ARGG+V+
Sbjct: 183 AEAKNI-ELLSLEQIWPQADYITVHVPLIKQTENLINKETLAKCKKGVRIINVARGGIVN 241

Query: 273 DEGLAAALKQGRIRAAALDVHENEP 297
           +  L  +L  G  + AA DV E EP
Sbjct: 242 EVDLVESLNAGHAKGAAFDVFEQEP 266


>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 333 DAPNLLCTPHAAFYSDASAQELREMAASEIRRAIVGRIPDC 373
           D PN  C P  AF   AS +E R+M  S  RR +    PDC
Sbjct: 367 DCPNSKCHPKLAFTCPAS-KEARKMCIS--RRKVCDGTPDC 404


>Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical
           protein F54C8.1 protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 167 SAGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD 205
           +A CA      + IVG G++GS +A    + GFNV+  D
Sbjct: 3   TAKCAMQNIRNVAIVGSGQMGSGIAQVTASSGFNVMLAD 41


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS 215
           C    G T+ + GLG +G AV + AKA G   I     +    EK+
Sbjct: 363 CKVEEGSTVAVWGLGAVGLAVIMGAKAAGAKKIVGIDLIESKFEKA 408


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,325
Number of Sequences: 27539
Number of extensions: 359074
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 6
length of query: 487
length of database: 12,573,161
effective HSP length: 84
effective length of query: 403
effective length of database: 10,259,885
effective search space: 4134733655
effective search space used: 4134733655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)