GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002346-TA|BGIBMGA002346-PA|IPR006140|D-isomer specific
2-hydroxyacid dehydrogenase, NAD-binding, IPR006139|D-isomer specific
2-hydroxyacid dehydrogenase, catalytic region
         (487 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   1.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   1.9  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

Query: 78  HTIILTKEDLEKFKALRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVE 127
           H  + TK+ L     L  IV+ G+G D+++V+  G+L + V  V G+G E
Sbjct: 349 HVKLYTKQGLN---VLGNIVQ-GNG-DSVNVQLYGQLDLLVRKVLGFGYE 393


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 50  ATVAFCDAQSTSEIHEKVLNEAVG-ALMWHTIILTKEDLEKFKALRIIVRIGSGVDNIDV 108
           ATV F     TS+++ + L+E +G A     + ++  D+   +   +++ I S   N D 
Sbjct: 470 ATVLFATETGTSQMYAEKLSELLGHAFHSQVLSMSDYDISNIEHEALLLVITSTFGNGDP 529

Query: 109 KAAGE 113
              GE
Sbjct: 530 PENGE 534


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,005
Number of Sequences: 429
Number of extensions: 3784
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 487
length of database: 140,377
effective HSP length: 60
effective length of query: 427
effective length of database: 114,637
effective search space: 48949999
effective search space used: 48949999
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)