GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002345-TA|BGIBMGA002345-PA|IPR003689|Zinc/iron permease
         (330 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    25   1.0  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.1  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   4.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   7.1  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 177 EKKDVAGYLNLMANSIDNFTHG--LAVGGSFLVGFRVGVLTTFAILV 221
           EKK+++ ++N++ N+  +F+     ++  + L+   +G +TTF I++
Sbjct: 295 EKKNISEFINVVLNNYPDFSAAGFFSINKTTLLQI-IGNVTTFFIII 340


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 282 FTAGGFLHIALVTV 295
           FTAGGF H+   T+
Sbjct: 290 FTAGGFFHVKKSTI 303


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 10  LSFAVGGLLGDVFLHLLPEAWENDMANTKAGQHVSLKS 47
           L    GG  GD F+ LL  A+   M  ++      +KS
Sbjct: 529 LQTTFGGTFGDTFIILLSMAFATRMKQSRTKIEALVKS 566


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 135 CCSMPTSNAGASGRCKGSS 153
           C SMP+ N    G   GSS
Sbjct: 34  CVSMPSMNCSPQGASFGSS 52


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,648
Number of Sequences: 317
Number of extensions: 2460
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 330
length of database: 114,650
effective HSP length: 57
effective length of query: 273
effective length of database: 96,581
effective search space: 26366613
effective search space used: 26366613
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)