GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002345-TA|BGIBMGA002345-PA|IPR003689|Zinc/iron permease
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...   102   8e-23
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    29   0.69 
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   8.5  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   8.5  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score =  102 bits (244), Expect = 8e-23
 Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 9/136 (6%)

Query: 172 SKEKTEKKDVAGYLNLMANSIDNFTHGLAVGGSFLVGFRVGVLTTFAILVHEIPHEVGDF 231
           S+E  +K  V  YLNL+ +S  NF  GLA+  +F     +G+ TTFA+L+HEIP E+GD 
Sbjct: 288 SEEYNDKTVV--YLNLLCDSFHNFMDGLAITSAFFTNTSIGISTTFAVLLHEIPAEIGDL 345

Query: 232 AILLKSGFSRWEXXXXXXXXXXXGLVGAMTAVVFSGASNSLEAKTSW-------IVPFTA 284
           AILL++G+++ +           GL+GA+ A     AS+S     S+       ++PFTA
Sbjct: 346 AILLRNGYTKSQVLVLQMITMVTGLLGAIVATYIYTASSSSSPYGSFLLQLEDKLLPFTA 405

Query: 285 GGFLHIALVTVLPDLL 300
           GGFL+IA + V P+LL
Sbjct: 406 GGFLYIAYLGVFPELL 421



 Score = 35.1 bits (77), Expect = 0.014
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 6   LRILLSFAVGGLLGDVFLHLLPEAWENDMANTKAGQHVSLKSGLWCLFGMLVFIVVEK 63
           L + ++ + G LLGDVFL LLP  +  +  +  A    S+      L G LVF +++K
Sbjct: 166 LNLFVAVSAGSLLGDVFLQLLPTVYSTNGGDFPASSVYSI------LIGALVFFLMDK 217


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 267 GASNSLEAKTSWIVPFTAGGFLHIALVTVLPDLLREHSKLESLKH-FAALALGIL 320
           G+S+ L      I   TAG  L ++L  +LP+ LR H   E+ +H F    +GIL
Sbjct: 354 GSSDFLNFLYGIIFAGTAGMMLILSLRVILPEALR-HDHSENKRHSFICFTIGIL 407


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 3   AATLRILLSFAVGGLLGDVFLHLLPEAWENDMANTKAGQHVSLKSGLWCLFGMLVFIVVE 62
           A T+  +    +GGLL    +HL    W         G    L +  WC++G+L+ I  +
Sbjct: 226 AQTVGFMAGSFLGGLLAKACMHLTNPIWN----QYTVGSWFMLFA--WCIYGILLSIFFK 279

Query: 63  KL 64
           ++
Sbjct: 280 EI 281


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 158 RCLLREAREKALRASKEKTEKKDVAGYLNLMANSIDNFT-HGLAVGGSFLVGFRVGVLTT 216
           R  L++AR   L A   + + K +   +NL   S +     G  +GG      +VGV+T 
Sbjct: 683 RLYLKQARHPCLEA---QDDVKFIPNDVNLEHGSSELLIITGPNMGGKSTYIRQVGVITV 739

Query: 217 FAILVHEIPHEVGDFAIL 234
            A +   +P EV D  I+
Sbjct: 740 MAQIGCPVPCEVADLDII 757


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,942
Number of Sequences: 5004
Number of extensions: 47006
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 7
length of query: 330
length of database: 2,362,478
effective HSP length: 73
effective length of query: 257
effective length of database: 1,997,186
effective search space: 513276802
effective search space used: 513276802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)