Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002345-TA|BGIBMGA002345-PA|IPR003689|Zinc/iron permease
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 47 2e-05
08_01_0001 - 14186-14288,14473-14590,14671-14727,14943-15010,151... 31 1.3
05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441 31 1.3
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 31 1.7
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 29 5.2
08_01_0970 - 9778183-9778488,9780052-9780567 29 5.2
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 29 5.2
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 29 5.2
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601 29 6.8
06_01_0317 + 2281564-2283855 29 6.8
11_01_0716 + 5900598-5901167 28 9.0
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 228 VGDFAILLKSGFSRWEXXXXXXXXXXXGLVGAMTAVVFSGASNSLEAKTSWIVPFTAGGF 287
VGDF IL++SGF+ + L G TA+ S + +S I FTAGGF
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAG--TALALSLGKDP--GHSSLIEGFTAGGF 291
Query: 288 LHIALVTVLPDLLREHSKLE-SLKHFAALALGILL 321
++IA+ VLP++ + + ++ S+ +L +G+L+
Sbjct: 292 IYIAVAGVLPEMNDQKTTVKSSMIQLVSLTMGMLV 326
>08_01_0001 -
14186-14288,14473-14590,14671-14727,14943-15010,
15104-15144,15405-15461,15980-16041,16833-16929,
17016-17102,17171-17263,17394-17452,17653-17716
Length = 301
Score = 31.1 bits (67), Expect = 1.3
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 4/138 (2%)
Query: 191 SIDNFTHGLAVGGSFLVGFRVGVLTTFAILVHEIPHEVGDFAILLKSGFSRWEXXXXXXX 250
S+ NF G A GFRVG+ + AI +H IP + + S+W+
Sbjct: 138 SLQNFPVGTAAFLGTTKGFRVGLNLSLAIALHYIPEGISVALPAYFATCSKWQAFKLATL 197
Query: 251 XXXXGLVGAMTAVVFSGASNSLEAKTSWIVPFTAGGFLHIALVTVLPDLLREHSKLESLK 310
+G + V + SN ++ G + L +LP + +++K
Sbjct: 198 SGFAEPLGVI-IVAYLFPSNLNPEILEGLLGLVGGVMAFLTLYEMLPIAFEYAGRKDAVK 256
Query: 311 HFAALALGILLMHTLTTY 328
A+ +G+ M Y
Sbjct: 257 ---AVFVGMAFMSMSKKY 271
>05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441
Length = 245
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 191 SIDNFTHGLAVGGSFL--VGFRVGVLTTFAILVHEIP 225
++ +F G VG SF GF G+L T AI VH IP
Sbjct: 165 TLHSFGEGSGVGVSFAGSKGFSQGLLVTIAIAVHNIP 201
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 273 EAKTSWIVPFTAGGFLHIALVTVL--PDLLREHSKLESLK 310
++ +SWI+P G + LVT++ L++E +KL S+K
Sbjct: 376 QSSSSWIIPVIGGSIGVVTLVTIVTCAYLIQERNKLHSIK 415
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 29.1 bits (62), Expect = 5.2
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 115 TAKQIYDSCIFNNNTKGEGGCCSMPTSNAGASGRCKGSSRWMGRCLLREAREKALRASKE 174
T K I D +F N K C + NA ASGR K S+ R +EK+ R K+
Sbjct: 603 TRKLILD--VFENGEKLVESLCELKRLNAHASGREKDGSKVEKRKKKSAKQEKSSRNVKQ 660
Query: 175 KTEKKDVAGYLNLMANSIDNF-THGLAVGGS-----FLVGFRVGVLTTFAILVHEIPHEV 228
+ L N F T +A S F GF ++T I H H V
Sbjct: 661 AVSSQTADTVLVDPPNQNQYFATEDMATNSSIGRPFFYQGFPSAGVSTSQIQGHTNIHSV 720
>08_01_0970 - 9778183-9778488,9780052-9780567
Length = 273
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 105 VDKGICNGTVTAKQIYDSCIFNNNTKGEGGCCSMPTS 141
VD G+C ++ + Q D + +N + + GCC PT+
Sbjct: 146 VDTGVCR-SLKSNQTLDEFVNSNLSPLQSGCCKPPTA 181
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 101 KHRGVDKGICNGTVTAKQIYDSCIFNNNTKGEGGCCSMPTSNAGASGRCK 150
+H V+ C + TA+ IY+SC F ++ + CC + G+CK
Sbjct: 21 EHIQVEAKSCCPSTTARNIYNSCRFTGASRDK--CCKISGCKI-VDGKCK 67
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 258 GAMTAVVFSGASNSL---EAKTSWIVPFTAGGFLHIALVTVLPDLLREHSKLESLKH 311
G M ++ A++ L K WI+ AGGF + LV ++ L ++ S+ H
Sbjct: 276 GTMDSIYIRLAASELPNSRTKKWWIIGIIAGGFATLGLVVIVFYSLHGRRRISSMNH 332
>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
Length = 390
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 8 ILLSFAVGGLLGDVFLHLLPEAWEN 32
++ +FA G +L F+H+LP+A++N
Sbjct: 86 LVKAFAAGVILATGFIHILPDAFDN 110
>06_01_0317 + 2281564-2283855
Length = 763
Score = 28.7 bits (61), Expect = 6.8
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 132 EGGCCSMPTSNAGASGRCKGSSRWMGRCLLREAREKALRASKEKTEKKDVAGYLNLMANS 191
E CCS + A+ G++R M L R R +A R + ++DV + +MA
Sbjct: 23 ERACCS-----SDAAAVVSGNNRLMAEHL-RAGRLEAAREVFDGMPRRDVVSWNTIMAVQ 76
Query: 192 IDNFTHGLAVGGSFLVGFRVG 212
+HG AV G+FL R G
Sbjct: 77 ARAGSHGRAV-GAFLEMRRQG 96
>11_01_0716 + 5900598-5901167
Length = 189
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 1 AGAATLRILLSFAV----GGLLGDVFLHLLPEAWENDMANTKAGQHVSLKSG 48
AG+A + FAV GG+L D+ LH++ EA E+ ++ A + + +G
Sbjct: 95 AGSARVGTAQGFAVRVSEGGVLSDLSLHMVLEAGEHRGSSVTAKGRIDMDAG 146
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,901,175
Number of Sequences: 37544
Number of extensions: 339322
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 14
length of query: 330
length of database: 14,793,348
effective HSP length: 82
effective length of query: 248
effective length of database: 11,714,740
effective search space: 2905255520
effective search space used: 2905255520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -