Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002344-TA|BGIBMGA002344-PA|undefined
         (55 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019016-1|AAH19016.1|  364|Homo sapiens solute carrier family 3...    38   0.007
BC008853-1|AAH08853.2|  371|Homo sapiens SLC39A13 protein protein.     38   0.007
AK098651-1|BAC05365.1|  325|Homo sapiens protein ( Homo sapiens ...    38   0.007

>BC019016-1|AAH19016.1|  364|Homo sapiens solute carrier family 39
          (zinc transporter), member 13 protein.
          Length = 364

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 14 EELDEHPWIFASLASMLVGLSGILPLFIIPLD 45
          E LD   WI + L S++VGLSG+ PL +IPL+
Sbjct: 63 ERLDT--WICSLLGSLMVGLSGVFPLLVIPLE 92


>BC008853-1|AAH08853.2|  371|Homo sapiens SLC39A13 protein
          protein.
          Length = 371

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 14 EELDEHPWIFASLASMLVGLSGILPLFIIPLD 45
          E LD   WI + L S++VGLSG+ PL +IPL+
Sbjct: 63 ERLDT--WICSLLGSLMVGLSGVFPLLVIPLE 92


>AK098651-1|BAC05365.1|  325|Homo sapiens protein ( Homo sapiens
          cDNA FLJ25785 fis, clone TST06832. ).
          Length = 325

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 14 EELDEHPWIFASLASMLVGLSGILPLFIIPLD 45
          E LD   WI + L S++VGLSG+ PL +IPL+
Sbjct: 63 ERLDT--WICSLLGSLMVGLSGVFPLLVIPLE 92


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.139    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,168,569
Number of Sequences: 224733
Number of extensions: 240735
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 3
length of query: 55
length of database: 73,234,838
effective HSP length: 35
effective length of query: 20
effective length of database: 65,369,183
effective search space: 1307383660
effective search space used: 1307383660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)