GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002344-TA|BGIBMGA002344-PA|undefined
         (55 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   0.23 
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    27   0.30 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    23   4.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   6.4  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    22   8.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    22   8.5  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    22   8.5  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    22   8.5  

>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 4   YVPEYLSNFVEELDEHPWIFASLA 27
           Y   Y+ N V+ LD+ PW+F + A
Sbjct: 374 YHDSYIHNVVQCLDDFPWLFLTTA 397


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 7  EYLSNFVEELDEHPWIFASLASMLVGLSGILP-LFIIPLDSSATFEDGRK 55
          + +SN+++ +  +P+I  S +S+L+  S  LP  F+I   +S   E+  K
Sbjct: 28 QVISNYLKPVRSYPYIKYSRSSLLLTASTTLPENFVISFTNSIESEESDK 77


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 23   FASLASMLVGLSGILPLFIIP 43
            F S+A  ++ +S  +P+F+IP
Sbjct: 1019 FLSVAGGILSVSSAMPIFMIP 1039


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 20   PWIFASLASMLVGL 33
            PW+F ++A  LVGL
Sbjct: 2049 PWLFYAVALFLVGL 2062


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 4   YVPEYLSNFVEELDEHPWIFASLASMLVGL 33
           Y  ++ SN VE++  HP + A     +V +
Sbjct: 147 YSGQFSSNIVEQIRLHPHVIAVERDQVVSI 176


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 7   EYLSNFVEELDEHPWIFASLASMLVGLSGILPLFIIPLDSSATFEDGRK 55
           E L +  E++D+ P    S +S +       P++++PL S  T ED  K
Sbjct: 673 EDLQSETEDIDQVP---TSSSSSVTYDDESEPMYVLPLYSLLTTEDQMK 718


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 12  FVEELDEHPWIFASLASMLVGLSGILPLFIIPLDSSATFEDGRK 55
           F+  L E P I  +        S + P+ I+P  +    EDG K
Sbjct: 68  FINTLCEKPLIRHNNNFDPAEASSVSPVEIVPYQTDIILEDGTK 111


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 1   MASYVPEYLSNFVEELDEHPWIFASLASMLVGLSGI-LPLFII 42
           +AS++  + SN++  +   P + +S ASM++G   +  P F+I
Sbjct: 146 LASWITGW-SNYIGNIIGQPSVNSSAASMILGAVTVNRPDFVI 187


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,312
Number of Sequences: 5004
Number of extensions: 8044
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 8
length of query: 55
length of database: 2,362,478
effective HSP length: 36
effective length of query: 19
effective length of database: 2,182,334
effective search space: 41464346
effective search space used: 41464346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)