GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002344-TA|BGIBMGA002344-PA|undefined
         (55 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    25   5.6  
11_03_0175 + 11241151-11241157,11241253-11241425,11241619-112417...    25   7.4  
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654...    25   7.4  
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936...    25   7.4  
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474...    25   9.8  
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168...    25   9.8  
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938...    25   9.8  

>03_01_0527 +
          3960982-3961290,3961371-3961464,3961898-3962084,
          3962194-3962449,3962561-3962773,3962856-3962942,
          3963089-3963223,3963296-3963409,3963507-3963754,
          3963824-3963904,3963979-3964210,3964340-3964438,
          3964513-3964701,3964928-3965023
          Length = 779

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 20 PWIFASLASMLVGLSGILPLFIIP-LDSSATF 50
          PW F  +A  LV L   + +F++P L SS  F
Sbjct: 7  PWAFLGVAGALVMLVAAVHVFMVPILPSSLDF 38


>11_03_0175 +
          11241151-11241157,11241253-11241425,11241619-11241702,
          11242895-11242936,11243407-11243517,11245384-11245575,
          11245776-11245859,11246162-11246259,11246670-11246859
          Length = 326

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 23 FASLASMLVGLSGILPLFIIPL 44
          F  L  ++VGL   +P F+IPL
Sbjct: 62 FTELEYLVVGLVSTVPAFVIPL 83


>03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,
            6541815-6543215,6543268-6543357,6543800-6544515,
            6545549-6545707,6545877-6546186,6546794-6546861,
            6547354-6547896
          Length = 1247

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 6    PEYLSNFVEELDEHPWIFASLASMLVGLSGILPLFIIPLDSSATFEDGRK 55
            PE L+NF++E D+  W+     +     S  L   + P +  A     RK
Sbjct: 976  PEELANFLKERDDLLWLHEICLNRFSSASKTLHTLVSP-EEDANLTSNRK 1024


>01_06_0675 +
          31092877-31092916,31093349-31093503,31093570-31093677,
          31094283-31094487,31094858-31094955,31095052-31095135,
          31095227-31095304,31095462-31095554,31095646-31095675,
          31095932-31096273,31096353-31096434,31096527-31096622,
          31096728-31096907,31097002-31097108,31097207-31097308,
          31097611-31097666,31097749-31098002,31098077-31098240,
          31098564-31098747,31098825-31098969,31099561-31099661,
          31099803-31099870
          Length = 923

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 27 ASMLVGLSGILPLFIIPLDSS 47
          A ++  L G+LP F +PLDSS
Sbjct: 18 AEVIDWLGGLLPEFDLPLDSS 38


>06_03_0541 -
           21944696-21944851,21944939-21945142,21945438-21947472,
           21947644-21947720,21948289-21948477,21949188-21949448,
           21949527-21949632,21951330-21951517,21951814-21951971,
           21952015-21952840,21952947-21953210
          Length = 1487

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 12  FVEELDEHPWIFASLASMLVGLS 34
           F+ E+D HP +  +L S+L+GL+
Sbjct: 598 FLLEMDPHPILEDNLVSILLGLA 620


>02_01_0256 +
           1680240-1680485,1680950-1681024,1681527-1681776,
           1681910-1681995,1682669-1682771,1683490-1683602,
           1684259-1684351
          Length = 321

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 17  DEHPWIFASLASMLVGLSGILPLFIIPL 44
           +EHP+ F ++A + + L G+L  F I +
Sbjct: 243 EEHPYAFYAMAILAIVLVGLLYGFFIAI 270


>01_01_1178 +
           9385261-9385374,9385457-9385620,9386251-9386453,
           9387130-9387362,9387584-9387640,9388120-9388241,
           9388366-9388425,9388426-9388543,9389005-9389286
          Length = 450

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 9   LSNFVEELDEHPWIFASLASM 29
           LS F++ L+EHP +  S AS+
Sbjct: 355 LSEFIKMLEEHPKLLMSRASV 375


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.139    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,098
Number of Sequences: 37544
Number of extensions: 44637
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 7
length of query: 55
length of database: 14,793,348
effective HSP length: 36
effective length of query: 19
effective length of database: 13,441,764
effective search space: 255393516
effective search space used: 255393516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)