GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002344-TA|BGIBMGA002344-PA|undefined
         (55 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50863-1|CAA90736.2|  362|Caenorhabditis elegans Hypothetical pr...    29   0.30 
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    25   8.4  

>Z50863-1|CAA90736.2|  362|Caenorhabditis elegans Hypothetical
           protein C14H10.1 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 15  ELDEHPWIFASLASMLVGLSGILPLFIIP 43
           E+    WI+A +   LV  +GILP F++P
Sbjct: 103 EVTSATWIYALIGCSLVVSTGILPAFLLP 131


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 11  NFVEELDEHPWIFASLASMLVGLSGILPLFIIPLDSSATFEDG 53
           +F+ +     W++A  A++L+  +    L  IP+ ++ T E G
Sbjct: 148 SFLNDAKTRLWVYAISATLLISAAPCFILMFIPIQAN-TSESG 189


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical protein
            C09H6.1b protein.
          Length = 1309

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 10   SNFVEELDEHPW 21
            SNF+E LD H W
Sbjct: 1175 SNFIEHLDRHGW 1186


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical protein
            C09H6.1a protein.
          Length = 1311

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 10   SNFVEELDEHPW 21
            SNF+E LD H W
Sbjct: 1175 SNFIEHLDRHGW 1186


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 21  WIFASLASMLVGLSGILPLFIIPLD 45
           W+  +L SM +G +G+L L+   LD
Sbjct: 705 WVVCTLISMDIGTAGLLSLWGADLD 729


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,306
Number of Sequences: 27539
Number of extensions: 37883
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 5
length of query: 55
length of database: 12,573,161
effective HSP length: 36
effective length of query: 19
effective length of database: 11,581,757
effective search space: 220053383
effective search space used: 220053383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)