GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002343-TA|BGIBMGA002343-PA|IPR001841|Zinc finger,
RING-type
         (384 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    27   0.30 
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    26   0.52 
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    26   0.52 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   1.2  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 178 IEVIVKVVVSLMIYSLFLIDAYRSTFWEQLDDYVYYIRAFGNTIEFCFGIF 228
           IE++  VV SL      L + +     E+ + +VYY R  G T++    +F
Sbjct: 321 IELMTSVVKSLESRYADLNENFLQCQDEKFESFVYYHRILGETVDLFNSLF 371


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory
          receptor candidate 18 protein.
          Length = 387

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 14 ISTLLAVQSLASMAKSLLVTGCETI-TAVLGMTSVISFFCHYIGNFFQWILLTDEEEDKS 72
          I  L  +  L+ M + L ++  + + T +LG T      C Y+ + + W +LT  +   S
Sbjct: 10 IKILAEIFGLSPMTQKLTLSPLKVLQTVILGTT------CIYLTSLYIWFILT--QMTFS 61

Query: 73 IGTVSAILFYILALQTG 89
            T   I+ ++L+ +TG
Sbjct: 62 GVTSPTIMKFVLSFRTG 78


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory
          receptor candidate 17 protein.
          Length = 372

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 14 ISTLLAVQSLASMAKSLLVTGCETI-TAVLGMTSVISFFCHYIGNFFQWILLTDEEEDKS 72
          I  L  +  L+ M + L ++  + + T +LG T      C Y+ + + W +LT  +   S
Sbjct: 10 IKILAEIFGLSPMTQKLTLSPLKVLQTVILGTT------CIYLTSLYIWFILT--QMTFS 61

Query: 73 IGTVSAILFYILALQTG 89
            T   I+ ++L+ +TG
Sbjct: 62 GVTSPTIMKFVLSFRTG 78


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 235 WILLFESGGAIRAVMMCIHAYFNIWCEAR--AGWSVFM 270
           W + +  G  I    +CI + FN W + R  + +SVF+
Sbjct: 40  WYICYTIGVIITIGCLCIWSIFNKWNQFRSYSNFSVFL 77


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.330    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,736
Number of Sequences: 317
Number of extensions: 3640
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 384
length of database: 114,650
effective HSP length: 58
effective length of query: 326
effective length of database: 96,264
effective search space: 31382064
effective search space used: 31382064
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 44 (21.8 bits)