Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002343-TA|BGIBMGA002343-PA|IPR001841|Zinc finger,
RING-type
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 44 3e-05
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 43 8e-05
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 42 1e-04
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 1e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 40 4e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 40 4e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 40 6e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 40 8e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 39 0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.003
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 37 0.005
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.010
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 35 0.017
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.029
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 33 0.051
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.068
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 31 0.27
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 30 0.48
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 30 0.63
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.83
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 29 0.83
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 1.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 28 2.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 2.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 28 2.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 4.4
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 4.4
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 27 5.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 5.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 7.8
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 7.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 7.8
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 7.8
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 7.8
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 44.4 bits (100), Expect = 3e-05
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 37/224 (16%)
Query: 139 HVRALGVCAFLIIFPISL-LVYLW--SQH--NVSTWLLAVTAFSIEVIVKVVVSLMIYSL 193
H+ + CA+ ++ + L+YL S+H + ST +L V FS+ +++ + + +
Sbjct: 136 HIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSV-LLLNLTIEASKLCI 194
Query: 194 FLIDA-YRSTFWEQLDDYVYYIRAFGNTIEFCFGIFLFFNGAWILLFESGGAIRAVMMCI 252
+L +A + W++ Y++ + + + L F + + +IR + C
Sbjct: 195 YLYEARHLDQVWDEKSTYLFRLEVCRDGLRL-LAYSLLFMYQFPYVSVPIYSIRQMYTCF 253
Query: 253 HAYFNIWCEARAGWSVFMKRRTAVNKINSL-KEASYTQLSNLDDVCAICYQEMH------ 305
++ F E + R A +N++ A+ QL+N D C IC +EM
Sbjct: 254 YSLFRRIRE-------HARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPP 306
Query: 306 ---------------SAKITRCNHFFHGVCLRKWLYVQDRCPLC 334
+ K C H H CLR WL Q CP+C
Sbjct: 307 ENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPIC 350
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 42.7 bits (96), Expect = 8e-05
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 290 LSNLDDVCAICYQEMHSAKITR---CNHFFHGVCLRKWL-YVQDRCPLCHDILYK 340
L + +D C ICY + I R C H FH C+ W+ ++ CPLC++ YK
Sbjct: 198 LEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDYYK 252
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 42.3 bits (95), Expect = 1e-04
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 281 SLKEA--SYTQLSN---LDDVCAICYQEMHS-----AKITRCNHFFHGVCLRKWLYVQDR 330
++KEA S+ LSN +D C ICY +M+ A C H F CL+KWL
Sbjct: 86 AVKEAWDSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCT 145
Query: 331 CPLC 334
CPLC
Sbjct: 146 CPLC 149
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 291 SNLDDVCAICYQEMH----SAKITRCNHFFHGVCLRKWL-YVQDRCPLC 334
S D+ C +C ++ +CNHFFH C+ +WL Q+ CPLC
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLC 567
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 40.3 bits (90), Expect = 4e-04
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 297 CAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 334
C++C + +H T C H F C+ W + CPLC
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLC 293
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 40.3 bits (90), Expect = 4e-04
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 296 VCAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLCHDILYK 340
+C IC + IT C H + CL WL CP+C L K
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNK 1135
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 39.9 bits (89), Expect = 6e-04
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 295 DVCAICYQEMHSAKITR----CNHFFHGVCLRKWLYV-QDRCPLC 334
D C IC + + I R C HFFH C+ +WL + CPLC
Sbjct: 764 DSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLC 808
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 39.5 bits (88), Expect = 8e-04
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 307 AKITRCNHFFHGVCLRKWLYVQDRCPLCHDILYKI 341
AKI C H+FH CL W V + CPLC K+
Sbjct: 52 AKIP-CGHYFHNHCLESWCRVANTCPLCRTEFLKV 85
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 297 CAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 334
C IC++ + IT C+H F C+R +L CP C
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPAC 66
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 297 CAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLCHDILY 339
C IC + + T C H + CL WL CP C LY
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLY 127
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 297 CAICY------QEMHSAKITRCNHFFHGVCLRKWLYVQD--RCPLC 334
CAICY + + + + C H FH CL KW + RCPLC
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLC 1603
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 35.9 bits (79), Expect = 0.010
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 297 CAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 334
C IC+ ++ ++ C H F G CL + L +CP C
Sbjct: 169 CQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTC 206
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.1 bits (77), Expect = 0.017
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 309 ITRCNHFFHGVCLRKWLYVQDRCPLC 334
+T C+H +H CL +W+ + CP+C
Sbjct: 644 LTPCHHLYHRQCLLQWMETRSICPVC 669
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 34.3 bits (75), Expect = 0.029
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 312 CNHFFHGVCLRKWLYVQDRCPLC 334
C H+FH C++ WL V C +C
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAIC 436
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 33.5 bits (73), Expect = 0.051
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 312 CNHFFHGVCLRKWLYVQDRCPL 333
CNH FH C+ +WL ++ CPL
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPL 95
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 33.1 bits (72), Expect = 0.068
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 297 CAICYQEMHSA---KITR-CNHFFHGVCLRKWLYVQDRCPLC 334
C +C + M S+ IT C H FH CL+KW CP+C
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVC 247
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 31.1 bits (67), Expect = 0.27
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 297 CAICYQEMHSA-KITR--CNHFFHGVCLRKWLY-VQDRCPLCH 335
C IC + K+ C H FH C+ KW+ + CP C+
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCN 363
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 294 DDVCAICYQEMHSAKIT--RCNHFFHGVCLRKWLYV---QDRCPL 333
D C C + I +C H FH C++ WL Q +CP+
Sbjct: 32 DGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPM 76
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 29.9 bits (64), Expect = 0.63
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 297 CAICYQEM-HSAKITR---CNHFFHGVCLRKWLYV-QDRCPLC 334
C IC E + + R C+H FH C+ +L D CPLC
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLC 540
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 297 CAICYQEMHSAK----ITRCNHFFHGVCLRKWLYVQDRCPLCHDILYKI 341
C IC + M +++ C+H H C +++ RCP C+ + +
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIINV 319
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 29.5 bits (63), Expect = 0.83
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 258 IWCEARAGWSVFMKRRTAVNKINSLK-EASYTQL--SNLDDVCAICYQEM-HSAKITRCN 313
IW E S F +T N +N+ + EA + + D+ C + Q + H T CN
Sbjct: 137 IWHEQNTDGSDFPSMKTFFNVMNTEEQEADEVMVYSATFDNRCPLTLQPIVHPILSTACN 196
Query: 314 HFFHGVCLRKWLYVQDRCPL 333
HF+ + L CP+
Sbjct: 197 HFYEKDAILSLLNPTCVCPV 216
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 294 DDVCAICYQEMHSAKITRCNHFFHGVCLRKWL---YVQDRCPLC 334
D C IC + T C H F C+ L +CP+C
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVC 246
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 293 LDDVCAICYQEMHS----AKITRCNHFFHGVCLRKWL 325
L C IC++E + A+I C FH C R WL
Sbjct: 226 LGQECIICFEEFAAGDRVARIEYCLCIFHLKCYRDWL 262
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 297 CAICYQEMH-SAKITRCNHF-FHGVCLRKWLYVQDRCPLC 334
C IC Q+ A+++ C H F C+ +W+ CP+C
Sbjct: 21 CVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPIC 60
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 284 EASYTQLSNLDDVCAICYQEMHSAKITRCNHFFHGVC-LR-KWLYVQDRCPLC 334
+AS + + +C IC + + + + CNH VC LR + LY C C
Sbjct: 68 DASKEEQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFC 120
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 289 QLSNLDDVCAICYQEMH-SAKITRCN---HFFHGVCLRKW 324
+L N C++C ++ S I C H FH C+RKW
Sbjct: 189 ELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKW 228
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 312 CNHFFHGVCLRKWLY--VQDRCPLC 334
C H H CLR W + D P+C
Sbjct: 806 CGHIGHESCLRSWYFDNTDDALPVC 830
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 296 VCAICYQEMHSAKITRCNHFFHGVCLRKWL 325
VC IC + A +RC+H F +C+ +++
Sbjct: 710 VCKICDEVAQDAIESRCHHTFCRLCVTEYI 739
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 143 LGVCAFLIIFPISLLVYLWSQHNVSTWLLAVTAFSIEVIVKVVVSLMIYSL 193
LG+ F+ F + LL + S VS +T F+I + + ++V+L Y +
Sbjct: 284 LGIVLFVSGFTLLLLPFSHSSQVVSPDSTILTLFTITLSIALLVTLCFYDV 334
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 99 FIRLCKNVCLLFTALLHFLHNIVNPMLMSLSASHNPSIHRHVRALGVC 146
F LC + + + LL ++ ++ P++MSL +S + + +R +C
Sbjct: 767 FTELCLTIPVRLSLLLPYMSYLMRPLVMSLKSSQE-LVSQGLRTFELC 813
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 159 YLWSQHNVSTWLLAVTAFSIEVIVKVVVSLMIYSL 193
++WS HNV W + + V + + + ++ SL
Sbjct: 2209 FMWSAHNVHKWAMFLLVILFYVAIWIALVALLASL 2243
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 106 VCLLFTALLHFLHNIVNPMLMSLSASHNPSIHRHVRALGVCAFLIIFPISLLVYLWSQHN 165
V +F ++H N V P ++ + N R+V + C + +Y W ++
Sbjct: 350 VLAVFFGIMH--QNGVIPAVLEVK---NIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYS 404
Query: 166 VSTWLLAVTAFS 177
TW+LA FS
Sbjct: 405 APTWMLARPKFS 416
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.2 bits (55), Expect = 7.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 278 KINSLKEASYTQLSNLDDVCAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDR----CPL 333
KI++LK S+ L +C C + + + + C H G CL + + Q R PL
Sbjct: 863 KIDTLK--SFEALITECPIC--CNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPL 918
Query: 334 CH 335
CH
Sbjct: 919 CH 920
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 7.8
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 281 SLKEASYTQLSNLDDV-CAICYQEMHSAKITRCNHFFHGVCLRKWLYVQ----DRCPLC 334
SL ++ + L D CAIC + C+H F CL + +Q D CPLC
Sbjct: 343 SLSSKLFSIIPQLRDFECAICSNVAYKPVRLGCSHVF---CLHCLIILQKQKVDFCPLC 398
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 119 NIVNPMLMSLSASHNPSIHRHVRALGVCAFLIIFP--ISLLVY 159
+++ +L SLS +++ HVR+L F +FP +SL V+
Sbjct: 43 DLIRDLLASLSKEGVVAVYNHVRSLLFTDFTEVFPEEVSLRVF 85
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.330 0.140 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,230
Number of Sequences: 5004
Number of extensions: 62270
Number of successful extensions: 263
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 42
length of query: 384
length of database: 2,362,478
effective HSP length: 74
effective length of query: 310
effective length of database: 1,992,182
effective search space: 617576420
effective search space used: 617576420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 55 (26.2 bits)
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