GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002343-TA|BGIBMGA002343-PA|IPR001841|Zinc finger,
RING-type
         (384 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    29   0.22 
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    29   0.22 
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   1.1  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 297 CAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 334
           C +C +      +T+C H+F   C         RC +C
Sbjct: 247 CYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 297 CAICYQEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 334
           C +C +      +T+C H+F   C         RC +C
Sbjct: 247 CYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 277 NKINSLKEASYTQLSNLDDVCAICYQEMHSAKITRCNHFFH 317
           NK N+ K     +LSN D  C I Y+ +   +I  C  + H
Sbjct: 42  NKYNTPKFRLIVRLSNRDITCQIAYRRIEGDRIV-CAAYSH 81


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.330    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,262
Number of Sequences: 2123
Number of extensions: 13209
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 384
length of database: 516,269
effective HSP length: 65
effective length of query: 319
effective length of database: 378,274
effective search space: 120669406
effective search space used: 120669406
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 49 (23.8 bits)