GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002343-TA|BGIBMGA002343-PA|IPR001841|Zinc finger,
RING-type
         (384 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   1.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   1.9  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 81  FYILALQTGLTSLHPEKRFIRLCKNVCLLFTALLHFLHNIVNPMLMSLS 129
           ++   + T L  L   KRF   C  V      ++ FLH   +P LM  S
Sbjct: 64  YFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLH---DPGLMEAS 109


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 81  FYILALQTGLTSLHPEKRFIRLCKNVCLLFTALLHFLHNIVNPMLMSLS 129
           ++   + T L  L   KRF   C  V      ++ FLH   +P LM  S
Sbjct: 64  YFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLH---DPGLMEAS 109


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,531
Number of Sequences: 429
Number of extensions: 3606
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 384
length of database: 140,377
effective HSP length: 59
effective length of query: 325
effective length of database: 115,066
effective search space: 37396450
effective search space used: 37396450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 45 (22.2 bits)