Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002342-TA|BGIBMGA002342-PA|undefined
(112 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0978 - 29358778-29358857,29359149-29359289,29359375-293594... 42 1e-04
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110... 29 1.1
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540... 28 1.9
11_06_0313 + 22306497-22308938 27 2.6
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 27 3.4
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 26 7.8
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 26 7.8
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 26 7.8
>03_05_0978 -
29358778-29358857,29359149-29359289,29359375-29359468,
29360931-29361170,29361438-29361488,29361850-29361936,
29362189-29362256,29362393-29362447,29362569-29362630,
29362751-29362951,29363043-29363202,29363294-29363482
Length = 475
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 40 VPVLSNVTVDHVDILEPDVNYYDANFYNAFFVTFFKFLVCCSVVIGFWAPLKTSKLVAAI 99
+P +++ T V + ++ + F N F + F +L+C S++ GFW KLV +
Sbjct: 369 IPQVASATATFVMMFSSSLSVVEFYFLNRFPIPFAVYLICISILAGFWGQSLVRKLVHVL 428
Query: 100 QYSSLYFDFILT 111
+ +SL FIL+
Sbjct: 429 KRASLIV-FILS 439
>03_05_0941 +
29008322-29009686,29009929-29010012,29010889-29011052,
29011208-29011233,29011494-29011583,29012135-29012229,
29012328-29012495
Length = 663
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 20 LFVVDEFLKISLGLPVSSEEVPVLSNVTVDHVDILEPD---VNYYDANFYNA 68
L VD+ ++ L P++ E++ + S +T++HV+ + + ++ Y+ ++Y+A
Sbjct: 158 LVTVDDVSEMHLVNPITGEQIALPSVITIEHVNPIFNESGAIHMYEYSWYSA 209
>06_01_0733 +
5405889-5405922,5405923-5405975,5406430-5406543,
5407464-5407523,5408139-5408217,5410661-5410728,
5411198-5411302,5411887-5411994,5412087-5412279,
5412818-5412897,5413309-5413536,5414112-5414252,
5414341-5414466,5414561-5414611,5414879-5414956,
5415814-5415960,5416685-5417179
Length = 719
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 33 LPVSSEEVPVLSNVTVDHVDILEPDVN 59
LPV +E P++S T DHVDIL N
Sbjct: 367 LPV--QETPLVSRKTSDHVDILREQFN 391
>11_06_0313 + 22306497-22308938
Length = 813
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 15 LRVPPLFVVDEFLKISLGLPVSSEEVPVLSNVTVDHVD 52
++ PP DE K G P ++VPVLS + VD
Sbjct: 154 VQTPPSATTDESGKKKRGRPKRVQDVPVLSTPSAPQVD 191
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 38 EEVPVLSNVTVDHVDIL 54
EE P+ S T+DHVD+L
Sbjct: 656 EETPLASRKTIDHVDLL 672
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 28 KISLGLPVSSEEVPVLSNVTVDHVDILEPDVNYYDANFYNAFFVTFFKFLVCCSVVIGFW 87
KI+L + + +V S + HV I A + F + F++L +V G W
Sbjct: 767 KITLSIGDGANDV---SMIQAAHVGIGISGQEGMQAVMASDFAIAQFRYLTDLLLVHGRW 823
Query: 88 APLKTSKLVAAIQYSSLYF 106
+ L+ K++ Y +L F
Sbjct: 824 SYLRLCKVITYFFYKNLTF 842
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 19 PLFVVDEFLKISLGLPVSSEEVP 41
PL + E L I GLP+ E+VP
Sbjct: 140 PLVISQEALHILTGLPMGQEDVP 162
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 19 PLFVVDEFLKISLGLPVSSEEVP 41
PL + E L I GLP+ E+VP
Sbjct: 107 PLVISQEALHILTGLPMGQEDVP 129
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.330 0.144 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,067
Number of Sequences: 37544
Number of extensions: 107519
Number of successful extensions: 302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 8
length of query: 112
length of database: 14,793,348
effective HSP length: 73
effective length of query: 39
effective length of database: 12,052,636
effective search space: 470052804
effective search space used: 470052804
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)
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